Burkholderia sp. RPE67: BRPE67_ACDS19800
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Entry
BRPE67_ACDS19800 CDS
T03604
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bue
Burkholderia sp. RPE67
Pathway
bue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRPE67_ACDS19800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bue03019
]
BRPE67_ACDS19800
03009 Ribosome biogenesis [BR:
bue03009
]
BRPE67_ACDS19800
Enzymes [BR:
bue01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BRPE67_ACDS19800
Messenger RNA biogenesis [BR:
bue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BRPE67_ACDS19800
Ribosome biogenesis [BR:
bue03009
]
Prokaryotic type
rRNA processing factors
BRPE67_ACDS19800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAO87035
LinkDB
All DBs
Position
1:2139476..2142790
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AA seq
1104 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVEMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLELPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGVAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNLSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLIPNKHLET
PHYKLERLRHDDARLDDPRASWKMAVEAASELESETGYSKRTEEVKPKQEAAVKGITPEK
PAPSAPVKPAPVEAAPAVAPVAPSGGFIAWIKNLFGIQPAAQPAPAPVEAQPAARPQRER
GERTGGGDRNRNRRSGSAPREGAAAGATPAGNGAGRQGARREDREARGGREGRELREVRE
PREAREPREAREPREAREPREAREPRDRNAERAARPEAGERQERRERPDRGERADRPERA
ERGERRKPQPEAAVEALTQSETVTSEIVETVQVDVDAQQTGFDAASADQAAARDGEERRR
RRRGRRGGRRDRDEDGMTVNHAADVAESEGAAESVSAQAGVFDAEAAQEAAARRETRPAV
PQAAEQPAVEAAAQPVAQPVAQPVAQPVAEPVEAKPQAEAPAAAEEAPVARAAEAEPFEL
KAQTPEPTTFDLFAKPAPAPEVENPFGPSPKTAEPQMADPFVPAVKTEEPKPAAVETPAE
PVVEAQAPAPVAVTEPAEPAEPVKAAAVAPTPEATAVEPVKPVERTEAPASVAASEPVAV
VSEPVKAAAPAAPATATPIAVAALQPMLEHAGLVWVNTDEGKLREANAAAAREPAPVRVP
RERKPLPPADTTPMQQVETGKSIH
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgtttaacgcgacgcagcaagaagaattgcgcgtcgccatcgtcgat
gggcagaagctcatcgacatcgatatcgaaactgccgggcgcgaacagcgcaaaggcaac
atctacaagggagtcgtcacccgcatcgagccgtcgctcgaagcctgcttcgtcaactac
ggcgaagatcgccacggcttcctgccgttcaaggaagtcgcgcgccagtatttccgcgac
ggcgtcgagatgcgctccgcgcgcattcaggatgcgctgcgcgaaggccaggaactcatc
gttcaggtcgagaaggaagagcgcggcaacaagggcgctgcgctgaccacgttcatctcg
ctggccggccgttacctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgacgagcggcaggaactgcgcgaaaccatggcgcagctcgaactgccg
gaaggcatgagcatcatcgcgcgcacggcgggcatcggccgttcggcggaagagctccag
tgggacctgaactacctgatgcaactgtggcgcgcgatcgaagccgcgtcgcagagcggc
gtcgccggccagccgatgctgatttatctcgaatcgagcctcgtcatccgcgcgattcgc
gactacttccagccggatatcggcgaaattctcatcgacacgaccgaaatccatgatcag
gcgcgcgccttcatggacatcgtgatgcccgacaacctctcgaaggtgaagcgctatcac
gacgacgtgccgctcttctcgcgcttccagatcgagcaccagatcgaaacggcgtactcg
cgcacggtgccgctgccctcgggcggcgcgatcgtgatcgatcacaccgaggcgctcgtc
gccatcgacgtgaactcggcgcgcgcgaccaagggcgcggacatcgaggaaaccgcgacg
cgcaccaatctcgaagccgccgacgaagtcgcgcgccagcttcgcctgcgcgatctgggc
ggcctgatcgtgatcgatttcatcgacatggaatcggccaagagccagcgcgaagtcgaa
cagcgcctgaaagacgcgctcaagcacgaccgcgcccgcgtacaaatgggcaagatttcg
cgcttcggcctgatggaactgtcgcgccagcggctgcgtccggcgctctcggaaggcagc
cacgtgacgtgcccgcgctgtaacggcacgggccatatccgcgataccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccat
tgccaggtgccggtcgaagtgaccgccttcctgctgaacgaaaagcgctcggaaatcaac
aagatcgagtcgcgtttcaaggtcaacgtcgttctgatcccgaacaagcatctcgaaacg
ccgcactacaagctggaacgcctgcgtcacgacgatgcgcgtctggacgatccgcgcgcc
tcgtggaagatggccgtggaagcggcgagcgagctggaatcggaaaccggctacagcaag
cgcaccgaggaagtgaagccgaagcaggaagcggccgtgaagggcatcacgcccgaaaag
cccgcaccgagcgcgccggtcaagcccgcgcctgtcgaggctgcgcccgctgtggcgccg
gtggcgccgagcggcggtttcatcgcctggatcaagaatctgttcggcattcagccggcg
gcgcaacccgcaccggctcccgtcgaagcgcaaccggccgcgcgtccgcagcgtgagcgc
ggcgagcgcacgggcggcggtgatcgcaaccgtaaccgtcgcagcggcagcgctccgcgc
gaaggcgcagcagccggcgcgacgccggctggcaatggcgcgggccgtcagggcgcgcgt
cgggaagaccgcgaggcgcgcggcggccgggaaggccgtgaactgcgcgaggtccgcgaa
ccgcgtgaagcgcgcgagccgcgtgaggcacgcgagccgcgtgaagcgcgtgaaccgcgc
gaggcacgtgagccgcgcgatcgcaacgcggaacgcgccgcgcgtccggaggcgggcgag
cgtcaggaacgccgcgagcgtccggatcgaggcgagcgcgccgaccgtccggaacgcgct
gaacgcggcgagcgccgcaagccgcaaccggaagccgccgtcgaagcgctgacccagagc
gaaaccgtgacgtcggagatcgtcgaaacggtgcaagtcgacgtcgacgcgcaacagacc
ggcttcgacgccgcatcggccgatcaagcggccgcgcgcgatggcgaagagcgccgtcgc
cgtcgccgtggccgtcgtggcggccgtcgcgatcgcgatgaggacggcatgaccgtgaat
cacgcagccgacgtcgcggaatcggaaggcgcagcggaaagcgtgtccgcgcaagccggc
gtgttcgacgccgaagccgcgcaggaagcggcggcccgtcgcgagacgcgccctgcagtc
ccgcaagcggccgagcagcctgccgtcgaagctgctgctcaacccgttgctcagcctgtt
gcgcaacccgttgctcaacccgtcgccgagccggtcgaagcgaagccgcaagcagaagcg
cccgccgccgccgaagaagcgccggttgcgcgcgccgccgaagccgagccattcgaactg
aaggcgcaaacgcccgagccgacgacgttcgatctcttcgcgaagcccgccccggcgccc
gaggtcgagaatccgttcggcccgtcgccgaagaccgccgagccgcagatggccgatccg
ttcgtgcccgccgtcaagacggaagagccgaagcccgccgccgtcgaaacgccggctgag
cctgtcgtggaagcgcaagcgccggcacccgtcgccgtgacggaacccgccgagcctgcc
gagccggtgaaagccgccgcggtcgcgccgacgcccgaagcgaccgccgtcgagccggtg
aagccggtcgagcgcacggaagcgccagcgagcgtcgcggctagcgaaccggtcgccgtg
gtttcggagccggtgaaggcggctgcgcccgccgcgcccgcgactgcgacgccgatcgcg
gtcgccgcgcttcagccgatgctggagcacgcgggcctcgtctgggtcaacacggacgaa
ggcaagctgcgcgaagcgaatgcagccgccgcgcgcgagccggcgccggtgcgcgtgccg
cgcgagcgcaagccgcttccgccggccgacaccacgccgatgcagcaagtggaaaccggc
aagagcatccactga
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