Chryseobacterium capnotolerans: H5J24_22790
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Entry
H5J24_22790 CDS
T08205
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ccao
Chryseobacterium capnotolerans
Pathway
ccao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H5J24_22790 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccao03019
]
H5J24_22790 (rnr)
03016 Transfer RNA biogenesis [BR:
ccao03016
]
H5J24_22790 (rnr)
Enzymes [BR:
ccao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H5J24_22790 (rnr)
Messenger RNA biogenesis [BR:
ccao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H5J24_22790 (rnr)
Transfer RNA biogenesis [BR:
ccao03016
]
Prokaryotic type
tRNA degradation factors
H5J24_22790 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
UHO38328
LinkDB
All DBs
Position
4944860..4947013
Genome browser
AA seq
717 aa
AA seq
DB search
MPKKRKYISHKNDLKLMEIGRLILRFMNANASKIYNYKQIADGIDYKNPRQRELVIQALH
KLQGSEKIKEVERGKYIVNLKIAGTLTGIIDFNQSGNAYVNVEGLEDDVFVHSKNVKDAL
QGDKVLIITYHYKGKKLEGSVLEVLERNRTEFVGTFQKVAHKDFGFVVCDKKSINTDIFI
PKTKFNNAEDGDKVIVKMTEWKPGDKNPEGEIIQVLGAPGEHETEIHAILAEYGLPYEFP
QEVEADADKIDRSITDEEVAKRWDMRNICTFTIDPKDAKDFDDALSIRKLENGNWEIGVH
IADVSHYVVPGTILDDEAYQRATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFE
LNDQAEIQKQWFGRTVIHSDRRFTYEEAQERIETGQGDLAEEINTLDRLAKIMRNDRIKN
GAITFDRSEVRFNLDENNEPVGVYFKISKDSNHLIEEFMLLANKKVSEFISLTRKGEITN
NTFIYRVHDDPDPAKLESLRDFVSTFGYKMNLANTKKVAESLNKLLHDVKGKGEENMIET
LAMRSMSKAVYSTEPIGHYGLGFAYYSHFTSPIRRYPDLLAHRLLQHYLDGGKSPSRPEL
EEKAKHCSSMERLAADAERDSIKYMQVKFMEKHLGETFTGVISGVAEFGFWVEIPENGAE
GLIKLRDLVDDSYMYDAKTHAVYGVRHGNKYQLGDQVQIKVVKANLIQKQLDFKIVE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaaaaagaaaatatataagtcataaaaatgatttgaaactgatggaaatcgga
agattgattcttcgtttcatgaatgcgaatgcatcaaaaatttataattataagcagatt
gctgatggaatagattataaaaatccaagacaaagagaacttgtcattcaggcactgcat
aaacttcagggatctgaaaagatcaaagaagtagaaagaggaaagtatatcgtaaacctg
aaaattgcgggaacacttactggaattattgattttaaccagagcggaaatgcctatgta
aatgtggaaggattagaagacgatgtcttcgttcattctaaaaatgtaaaggatgcgcta
cagggagataaggttcttattataacttatcattataaaggaaagaaacttgaagggtcc
gttttggaggttttggagcgaaacagaacagagtttgtggggacttttcagaaggtggct
cataaggattttggatttgtggtttgtgataaaaaatcaatcaatacagatatctttatt
ccgaagacaaaattcaataatgcagaagatggggataaggttattgtaaagatgacagaa
tggaaacctggagataaaaatcctgaaggagaaatcatacaggtattaggtgctccggga
gaacatgaaacagaaattcatgctattcttgctgaatatggtctaccttatgagtttcca
caggaagtagaagcagatgctgataaaatagacagaagtattacggatgaagaagtagca
aaacgttgggatatgcgtaatatttgtacgtttaccattgaccctaaagatgcgaaagat
tttgatgatgctctatccataagaaagctggaaaacggaaactgggaaatcggggttcac
attgctgatgtatcgcattatgtagttccgggaacgatccttgatgatgaagcttaccag
agagctacttcagtgtatttagtagacagagtcgtaccaatgcttccggaagtattaagt
aatgatgtatgttctcttcgcccgaatgaggataaatataccttctcagcagtttttgaa
ctgaatgatcaggcagaaatccagaaacaatggtttggaagaacagtaattcattcagac
agaagatttacctatgaagaagctcaggaacgtattgaaacaggtcagggagatttggct
gaagagatcaatactcttgacagattagcgaagattatgcgtaatgatcgtattaaaaac
ggagccattacttttgacagaagtgaagtaagattcaacctggatgaaaataatgagcca
gttggagtatactttaaaatcagtaaagattccaatcacctgatcgaggaattcatgctt
ttagccaataaaaaagtatctgaatttatttccttaaccagaaagggagaaattactaat
aatactttcatctacagggttcacgatgatccggatcctgctaagttagaatcgttaaga
gattttgtttctactttcggatataagatgaacttagcgaataccaaaaaggttgcagaa
tctttgaataaacttcttcatgacgtcaaaggaaaaggagaagaaaatatgatcgaaacc
cttgcgatgagaagtatgagtaaggcggtatattctacggaacctataggacactatgga
ttagggtttgcatactatagccacttcacctctcctatccgtcgttatccggatttgctt
gcccaccgtcttcttcaacattatcttgatggaggaaaatctccaagcagacctgaactg
gaagaaaaagcaaaacactgcagttctatggaaagattagcagctgatgcagaaagggat
tctatcaagtatatgcaggtgaaatttatggaaaaacatcttggtgaaactttcactgga
gtcatttccggagtggcagaatttggattctgggtagaaattcctgaaaacggtgctgaa
ggccttatcaaattaagagatttagtagatgattcttatatgtatgatgccaaaacacat
gctgtatacggagtgagacacggaaacaaataccagttgggagatcaggttcagatcaaa
gtagtaaaagcgaatctaatccagaaacaattggactttaagattgttgaataa
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