Corynebacterium epidermidicanis: CEPID_09675
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Entry
CEPID_09675 CDS
T03955
Symbol
rne
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cei
Corynebacterium epidermidicanis
Pathway
cei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEPID_09675 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cei03019
]
CEPID_09675 (rne)
03009 Ribosome biogenesis [BR:
cei03009
]
CEPID_09675 (rne)
Enzymes [BR:
cei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CEPID_09675 (rne)
Messenger RNA biogenesis [BR:
cei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CEPID_09675 (rne)
Ribosome biogenesis [BR:
cei03009
]
Prokaryotic type
rRNA processing factors
CEPID_09675 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
DUF5969
Motif
Other DBs
NCBI-ProteinID:
AKK03780
UniProt:
A0A0G3GTB5
LinkDB
All DBs
Position
complement(2030293..2033259)
Genome browser
AA seq
988 aa
AA seq
DB search
MAKIDRAQLGEKTRVHILAKQLGLTSKELIAELDKLGLVKVAQSNLSTDEVHRVLDVLDP
AETPEPKTKPAKKPAKKAAKKAAKKATKSAAKLVEEPAPHTVPEFVESTEDSEDDALRRR
VEKNVANEIHQIEEKVEKQLAAIDLHAAALAEQDAELLEDVVPEVTPPPAETTFVTPIFQ
APEPLVISADEAEDDDFADNSDEDDNSSRSKRRGRRGRGRGKGSTQQDGETGVDNSDLEA
SEGATDEETIEEPMGIKGSTRLEAQRRRRSERREESRKKRHIVSEAEFLARRESVERTMV
VREKQRSDGHGYVTQVGVLEDEMLVEHFVTSETQSSMVGNIYLGRVQNVLPSMEAAFIDI
GKGRNGVLYAGEVDWKSAGLGGRSRKIEQALKSGDQVLVQVSKDPVGHKGARLTTQISLA
GRFLVYVPGGRSAGISRKLPETERKRLKEILKEVIPGDGGAIIRTAAEGVHEREIRADVN
RLHNLWEQIQQRTAEEKSAKGAKPVTMYEEPDMLVKVVRDLFNEDFDHLIVDGRRSWSTV
HAYVKSVAPDLLDRVVKYQAAEHGGVDAFEAYRIDEQLQKALSRKVWLPSGGTLVIDRTE
AMTVIDVNTGKFTGAGGNLEETVTKNNLEAAEEIVRQMRLRDMGGMIVIDFIDMVLPENQ
DLVLRRLTEALGRDRTRHQVSEVTSLGLVQVTRKKLGTGLLETFATECECCAGRGLIVHS
DPIEQVEERPVYGKRSRAEHETIPTVPSHPEHDPKQHPLVVAMQHEEPKKSIEELADAVV
VLDTEPEESSPAPARRRGRRRAKNEATFDIQQIAEEAVASADEQDPEEPSGADYRPAETY
DEALAAFKASPRRRRATRGNSVSDHEPKPEDYATIAEDPVREPEENTAGVKTQRQRGRRR
VVKRLAPQLETQAPEPEVKQPVAAEAVATGTPRRGRRRAVKKLASGRVVQPVAQQVVEKE
QPVVAKQQKPQSSQGTRRRRRVVRKQEG
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaattgatagagcgcaactcggtgagaaaacacgagttcacatcctggcgaaa
caactaggattgacctcgaaggaactcatcgctgagctggacaaactgggtctagtgaaa
gtcgcgcaatccaacctgagcaccgacgaagtgcaccgtgtgctggacgtgcttgacccg
gcagaaacgccagaaccgaagacgaagcccgccaagaagcccgccaagaaagccgctaaa
aaggcagccaaaaaagccaccaagagcgctgccaaactcgtcgaggagccggctccacac
acagtgcctgaattcgtcgaaagcaccgaagactctgaagacgatgcgttgcgacgccgt
gtcgaaaagaacgtcgccaacgagatccatcagattgaggagaaggtcgagaagcaactg
gccgcgatcgacctccacgccgccgctcttgctgaacaagacgcagagctgctggaagat
gtggtccctgaagtgaccccgccaccagcagaaactacctttgttaccccgattttccag
gcgccggaaccactcgttatctctgccgatgaagcagaagatgatgatttcgcggacaat
tcagacgaagatgacaactcatctcgttcgaagcgacgcgggcgtaggggccgggggcgt
ggcaaaggctcgacgcagcaggacggcgagacgggcgtcgataatagcgaccttgaggcc
tcggagggcgcaactgacgaggaaaccatcgaggaacccatggggatcaaggggtccacg
cgtctggaggcgcagcgccggcgccgttctgagcgtcgggaggagtcccgcaagaagcgt
cacatcgtttctgaagctgagtttctcgcgcgacgcgaatcggtcgagcgaaccatggtg
gttcgcgaaaagcagcgttccgacggccacggctacgtcactcaggtcggcgttttggaa
gacgagatgctcgtggagcatttcgtaacgtctgaaacccagtccagcatggtgggcaac
atctacctcggtcgcgtgcagaatgtcttgccgagcatggaggctgcattcatcgacatc
ggtaaggggcgtaatggcgtgctctacgccggtgaggtggattggaagtccgctggtctc
ggtggccgttcccgcaagattgagcaggcgctcaagtccggtgaccaggtcctcgtgcag
gtctctaaggacccagttgggcacaagggtgcccgcttaacgacgcaaatctcgctcgca
ggccgcttcttggtctatgttccaggtggtcgttccgctgggatctcccggaagcttcca
gaaacagaacgcaagcgcctcaaggagatcctcaaagaggtcatccccggcgatggcggc
gccatcatccgcaccgcagccgaaggcgtgcacgagcgggaaatcagagccgatgtgaac
cgcctgcataacctgtgggaacagatccaacagcgcaccgcggaggagaaatccgccaag
ggcgcgaaaccggtgaccatgtacgaggaaccggacatgctggttaaggtcgttcgtgac
ctgttcaatgaggactttgaccatctcatcgtcgatggtcgacgttcctggagcaccgtg
catgcctacgtgaagtcagttgcgcctgatctgcttgatcgagtggtcaagtaccaggct
gccgagcacggcggcgtggacgcctttgaggcgtaccgaatcgatgagcaactccaaaag
gcactttcccgcaaggtgtggttgccttccggaggcaccctggtcatcgatcgcacggaa
gccatgactgtgattgacgtcaacaccggcaagttcaccggtgctggtggcaacctcgaa
gaaaccgtcaccaagaacaacctcgaggcagccgaagaaatcgtccgtcagatgcgcctg
cgcgacatgggcggcatgatcgtgatcgacttcatcgatatggtgctgccagaaaaccaa
gacctggtcctgcgtcgcctcaccgaagcactcggccgggaccgaacccgccaccaagtc
tccgaagtgacttccctcggcttggtgcaggtaacgcgcaagaagctcggtaccggattg
ctggaaaccttcgctactgagtgtgaatgctgcgctggccgtggcctgatcgtgcatagc
gatcccatcgagcaggtggaggagcgcccggtctacggcaagcgctcgcgcgccgaacac
gaaactatcccaaccgtgccgagccatcccgagcatgatccgaaacaacatccgctggtc
gtggcgatgcagcacgaggagccaaagaagtccatcgaggagcttgccgacgccgtagtg
gtcctcgacaccgaacccgaagaatccagcccggccccagcgcgtcgtcgtggtcgtcgt
cgggcgaagaacgaagcgacctttgacatccagcagattgccgaagaagcagtagcgtcg
gcggatgaacaagaccccgaagaaccttcgggtgcggattaccgcccggccgagacctat
gacgaagccctagctgcgtttaaggcatcgcctcgacgacgtcgcgcaacccgaggcaac
tccgtttcggatcacgaaccaaagcccgaggactacgctacgattgccgaagatccagtc
cgggaacccgaagaaaatactgctggtgtaaagactcagcggcaacgcggacgccgacgt
gtggtcaagcgcctggcgccgcaactggagactcaagcaccagaacccgaggtcaagcaa
cctgtcgctgcggaagccgtagcgacgggtaccccacgtcgggggcgacgacgcgccgtg
aagaagttggcttctggacgagtcgtacaaccggtggctcagcaggtcgttgagaaagag
caaccggtcgtcgcaaagcaacaaaagcctcaatcgtcacaggggacacgccgtaggcgc
cgggttgtacggaaacaggaaggctaa
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