Crinalium epipsammum: Cri9333_3028
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Entry
Cri9333_3028 CDS
T02373
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cep
Crinalium epipsammum
Pathway
cep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cri9333_3028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cep03019
]
Cri9333_3028
03009 Ribosome biogenesis [BR:
cep03009
]
Cri9333_3028
Enzymes [BR:
cep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Cri9333_3028
Messenger RNA biogenesis [BR:
cep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cri9333_3028
Ribosome biogenesis [BR:
cep03009
]
Prokaryotic type
rRNA processing factors
Cri9333_3028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
AFZ13867
UniProt:
K9W286
LinkDB
All DBs
Position
complement(3404684..3406993)
Genome browser
AA seq
769 aa
AA seq
DB search
MPKQIIIAEQHRIAAVFSEDQIQELVVATGNHQVGDIYLGSVENVLPGIDAAFVNIGDSA
RNGFIHVTDLGPLRLKRSAGGITELLTPQQKVLVQVMKEPTGNKGPRLTGNVTLPGRYVV
LMPYGRGVNLSRRIKSEPERNRLRALAVLIKPAGMGLLIRTEAEGKAEEAIIEDLETLQK
QWELVQQEANSTRAPALLNRDDDFIQRVLRDMYSADVNRIVVDSNTGVKRVKQHILSWSG
GKAPEGVLIDHHRERLPVLDYFRVNAAIREALKPRVDLPSGGYIIIQPTEALTVIDVNSG
SFTRSATARETVLWTNCEAATEIARQLRLRNVAGVIIVDFIDMDSHKDQLQVLEHFNKQL
REDKARPQIAQLSELGLVELTRKRMGQNIYELFGHTCTTCGGLGHLVRLPGETTRNGEIA
EPGAPVPVIPISNREVNRDREVNRELNREVNREVNREVSREVNREVNREVNREVRTIPYP
NTPSVREVAPLENWQERNELSDFDPSEDESELDLFNHPSYQEQGIIPNNRRKRRRKIDDL
PLRDELPKTNIRIPSRPSTFNESRPSTFNEFKRDLPLESEEQGNLEPYRHVVPEIERVEK
PQRPRPSRQETEPPEIISIEMTPEEQDVYALMGVSPLIRVNRQIKNPKSVIIALVPPGES
NTTETQTELPLELPRDTAVETTVRESATTEQPTVIEQPTVIEQPTAIEQPTVIEQPTIIE
QPTAIASEITEPDATQIGEEQPLVSDVPDSDTTINRRRRRRSSAIASES
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagcaaataattatcgcagagcagcatcggatagctgccgtgttttctgaagat
caaattcaagaacttgttgttgccactgggaatcatcaagttggcgacatttatttaggt
agcgttgaaaacgtcttaccagggatagatgcagcatttgtaaatattggagattctgcg
cgaaacggctttattcatgtcactgatttaggaccattacgactcaagcgcagtgctgga
ggaattactgaactgctgacaccacagcaaaaagtattagtccaggtaatgaaagagccg
acggggaataaaggacctcgacttacaggcaacgttaccttgcctggtcgctacgtggta
ctaatgccctatggacgtggtgttaatctctctagaagaataaaaagcgaacctgagcgc
aaccgcctgagagccttggcagtattaattaagcccgccggaatgggactattaatccgt
accgaagctgagggcaaagcagaagaagcaattattgaagatttagaaacactgcaaaag
cagtgggaattagttcagcaagaagctaattctactagagcgccagcactacttaatcgt
gatgatgattttattcagcgtgtattgcgggatatgtacagtgccgatgtaaatcggatt
gtggttgattccaataccggagtaaagcgagtcaagcaacatatattaagttggagtggt
ggtaaagcgccagaaggtgtattaattgaccatcaccgtgagcgattaccagttttagat
tatttccgtgtcaatgcggcgattagagaagccctcaaacccagagttgatttgccttcc
ggcggttatatcatcattcaaccgacagaagcactaacagtaattgatgtcaactccggt
tcttttacccgttcagcaacagcgcgggaaacagttctgtggacaaattgcgaagcagca
acagaaatcgctcgtcagctaaggttaagaaatgttgctggtgtgattattgttgacttc
attgatatggactcgcacaaagaccaacttcaggtcttagagcattttaataagcaactc
agagaagacaaagctagaccacagattgctcaactctcggaactcggcttggttgaactg
actcgcaagcgcatgggtcaaaatatctatgaattgtttggtcatacttgtacaacctgc
ggtggattaggtcatttagtacgcttaccaggtgaaactacccgtaatggggaaattgca
gaacctggtgcgccagtacctgtaattccaatttccaacagagaagtaaatagagacaga
gaggtaaatagggaactaaatagagaggtaaatagagaagtaaatagagaggtaagtagg
gaagtaaatagagaggtaaatagagaagtaaatagggaagtaaggacaataccctacccc
aacacccccagtgtgcgggaagttgccccattagagaattggcaagaacgcaacgaacta
tcagattttgatccttcagaggatgaatcagaattagatttgtttaatcatcctagctat
caagagcaaggaataattcctaacaatcgtcgtaaacgtcggcgtaagattgatgatcta
cctttaagggatgaactacctaaaactaacattcgtatcccctctcgtccctctactttt
aatgagtctcgcccttctacgtttaatgagttcaagcgagatttaccgttagaatctgag
gaacagggaaatcttgagccatatcggcacgttgtcccagaaatagaacgggtagagaaa
cctcagcgtcctagaccttctcggcaagaaactgaaccccctgagattatctcgatagag
atgacaccggaggaacaagatgtttatgctttgatgggtgtttctcctctaatccgtgta
aatcggcaaattaagaatcccaaatcagtaattatcgcacttgttccacctggagaatct
aataccacagagacacaaacagaactaccgttagagttgcctagagatactgctgtggaa
acaacggttagggaatcagctactacagaacagccaactgtaatagaacagccaactgta
atagaacagccaactgcaatagaacagccaactgtaatagaacagccgactataatagaa
cagccaactgcgatcgcatcagaaattactgagccagatgctactcagataggtgaggaa
cagccgttagtttcggatgtacctgatagcgacacaactattaaccgtcgccgtcgtcgt
cgctcatctgcgatcgcatcagaaagttaa
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