Capra hircus (goat): 102189284
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Entry
102189284 CDS
T02910
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
chx
Capra hircus (goat)
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
chx03016
]
102189284 (RTCB)
Enzymes [BR:
chx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
102189284 (RTCB)
Transfer RNA biogenesis [BR:
chx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
102189284 (RTCB)
Prokaryotic type
tRNA splicing ligases
102189284 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
102189284
NCBI-ProteinID:
XP_005680642
EnsemblRapid:
ENSCHIG00000027009
UniProt:
A0A452GA81
LinkDB
All DBs
Position
5:complement(69696203..69723193)
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagttataatgatgagctgcaattcttggaaaagataaataagaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
tctctggaaaaattaatgtttgaagaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacaaattggcaatgtggccgccctgcctgggattgttcat
cgatccatcggtcttcctgatgtccattcaggctatgggtttgctattggaaatatggca
gcctttgatatgaatgaccctgaagcagtggtatccccaggtggtgtcggatttgacatt
aactgtggtgtccgcttgctgagaaccaatttagatgaaagtgatgttcagcctgtgaaa
gagcaacttgcccaagctatgtttgaccacattcctgtgggagtggggtcaaaaggtgtc
atcccaatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
agagaaggctatgcctgggcagaggacaaggagcactgtgaggagtatggaaggatgctg
caagctgatcccaataaagtctcagccagggctaaaaaaagaggccttccccagttgggg
actctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaacgag
tatgctgctaagaaaatgggcattgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagttgccacagatgcacttgtggctatggaaaaagcc
atgaagagagacaagattatagtcaacgaccgtcagttggcttgtgctcgaatcgcttcc
ccagagggtcaggactacctgaagggaatggcagcagctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaacccct
gatgacctggacctgcacgtgatctatgatgtttctcacaatatcgctaaagtagaacag
catgtggtggacgggaaggagcggactctcttagtacacaggaaggggtccacccgagcc
ttccctcctcaccatcccctcattgcggtagattaccaacttaccggacaaccagtgctc
attggtggcaccatgggaacctgtagctatgttcttactggtactgagcagggcatgact
gaaacctttggaacaacttgtcatggagcgggccgtgccctgtcccgagcaaagtcaaga
cgtaatttagatttccaggacgtcctcgacaaattggcagacatgggaattgcaatccgt
gtcgcctcacccaagctggtaatggaagaggcccctgagtcctataagaacgtgacggat
gtggtgaacacctgccatgatgccggaatcagcaagaaggccattaaactgaggccaatt
gctgtaatcaaaggatag
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