Chromobacterium vaccinii: BKX93_22335
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Entry
BKX93_22335 CDS
T04565
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cvc
Chromobacterium vaccinii
Pathway
cvc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKX93_22335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvc03019
]
BKX93_22335
03009 Ribosome biogenesis [BR:
cvc03009
]
BKX93_22335
Enzymes [BR:
cvc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BKX93_22335
Messenger RNA biogenesis [BR:
cvc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BKX93_22335
Ribosome biogenesis [BR:
cvc03009
]
Prokaryotic type
rRNA processing factors
BKX93_22335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AOZ52479
UniProt:
A0A1D9LMK4
LinkDB
All DBs
Position
4833999..4836935
Genome browser
AA seq
978 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGIITRIEPSLEACFVDY
GTERHGFLPFKEVSRSYFQGYEGGRPRIQDVLREGMEVVVQVEKDERGNKGAALTTYISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELKDLLSQLEVSHGMSLIARTAGIGRNLEELQW
DLGYLMQLWRAIEGAAGAQSAPFLILQEGSLVIRAIRDYFHPDIGEVLIDTDEIHDQARQ
FMSHVMPNMLSRVKVYKDHVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEALVSID
VNSARATKGADIEETAVKTNLEAAEEIARQLRLRDLGGLVVIDFIDMENPKNQRDVENRL
RDVLKHDRARVQMGKLSRFGLLELSRQRLQPSLGETSHEPCPRCHGIGFIRGTESSALHI
LRIIQEEAMKENTGAVHAQVPVDVATFLLNEKRAEIHSIEERLDVDVVLIPNIHLETPHY
KIVRVRHDDLAELGEAPSYSRVEVQEEDVITNFGQEKPKVERQEAAVKGITPQQPAPNVE
AKPAKPAEQGGLFAGIAAWIKSLFAEPEKAPAQDAKKKPAPAASRNNEQRGNRQRQQERR
TGGQARREHDQRRHVQQDEGKTRRQDERKDGERAERVERKEAPSREREERSEQPREPRGN
RRRERESREPREPREPKEVREQAPREERVSEKAERQDKPQQESRRRQAPAAAPAEAVEKP
VQEELRLDAEGEQAEQERSERRRRRSRRDRRRDNPEAQQDGVAEAVSESPAAPVAEAAGA
TVAAAVAAVVVESAVEAVESKPQLEVEAKPAVESAPVEPVVAEQQAPVVIVAEAQPEAVV
VEPAVVVEAEQAPVAEPVAVAPVVEAEAEAQSELAAPEALVVEEAAPVVLAMVEEAPVAE
APAVKIEAIAVESKPVAVESKPLDLGGLVMIATKPVSQQPSATSEPELPQGPRRRDVAAA
DAAVVEPVQLMQVETRNG
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgttcaatgcgacgcaagccgaagagctgcgcgtcgcgattgtcgac
gggcagaagctcgtcgatctcgatatcgagaccgtaggcaaggaacagcgcaaaggcaat
atctacaagggtatcatcacccggatcgagccctcgctggaagcctgcttcgtcgattac
ggcaccgagcgtcacggcttcctgccgttcaaggaagtgtcccgctcctatttccagggc
tatgagggcggccgtccgcgcattcaggacgtgctgcgcgaaggcatggaagtggtggtg
caggtggagaaggacgagcgcggcaacaagggagcggcgctgaccacctacatcagcctg
gccggccgctatctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgccgc
atcgagggcgaagagcgccaggaactgaaggatctgctgtcgcagctggaagtgtcgcat
ggcatgagcctgatcgcgcgcaccgccggcatcggccgcaatctggaagagctgcagtgg
gacctcggttacctgatgcagctgtggcgcgccatcgagggcgctgccggcgcgcaatcc
gcgccgttcctgattctgcaggaaggcagtctggtgatccgcgcgatccgcgactatttc
catccggacatcggcgaagtgctgatcgacactgacgaaatccacgatcaggcccgccag
ttcatgagccatgtgatgccgaacatgctgtcgcgtgtgaaggtgtacaaggatcatgtg
ccgctgttctcccgcttccagatcgaacaccagatcgaaaccgccttctcgcgcagcgtg
cagctgccgtccggcggcgcgatcgtgatcgaccataccgaagcgctggtctccatcgac
gtgaactcggctcgcgccaccaagggcgccgacatcgaggaaaccgcggtcaagaccaat
ctggaagcggcggaagagatcgcccgccagctgcgcctgcgcgacttgggcggactggtg
gtgatcgacttcatcgacatggaaaacccgaagaaccagcgcgacgtggaaaaccgcctg
cgcgacgttctgaagcatgaccgcgcccgcgtgcagatgggcaagctgtcccgtttcggc
ctgcttgaactgtcccgccagcgcctgcagccgtccctgggcgagaccagccacgagcca
tgtccgcgctgccacggcatcggcttcatccgcggcaccgaatcgtcggcgctgcacatc
ctgcgcatcatccaggaagaagcgatgaaggaaaacaccggcgcggtgcacgcgcaggtg
ccggtcgacgtggccaccttcctgctgaacgagaagcgcgccgagatccactcgatcgaa
gagcgcctggatgtcgacgtggtgctgatcccgaacatccatctcgaaaccccgcactac
aagatcgtgcgcgtgcgccacgacgacctggctgagctgggagaagcgccgagctacagc
cgcgttgaagtgcaggaagaggacgtgatcaccaatttcggccaggaaaagccgaaggtg
gagcgtcaggaggctgcggtcaagggcatcacgccgcagcagccggccccgaacgtggag
gccaagccggccaagcccgcggagcaaggcggcctgttcgccggcatcgcggcctggatc
aagagcttgttcgccgagccggaaaaggcgcccgcgcaggatgccaagaaaaaaccggcg
ccggccgcttcgcgcaacaacgagcagcgcggcaaccgccaacggcagcaggagcgccgc
accggcggccaggcccgccgcgagcacgaccagcgccgtcatgtccagcaggatgagggc
aagacccgtcgccaggacgagcgcaaggatggcgaacgcgctgagcgcgtagagcgcaag
gaagcgccgagccgcgagcgcgaagagcgcagcgagcagccgcgcgagccgcgaggcaac
cgccgccgcgaacgcgagagccgcgagccgcgtgaaccgcgcgagcccaaggaagtccgc
gagcaggcgccgcgcgaagagcgcgtgagcgagaaggccgagaggcaggacaagccgcaa
caggagtcgcgtcgccgccaggcgccggcagcagctccggctgaagccgtcgaaaaaccg
gtgcaggaagaactgcgtctggatgccgaaggcgagcaagccgagcaggagcgcagcgaa
cgccgccgccgccgcagccgccgcgatcgtcgccgcgacaatccggaagctcagcaggac
ggcgttgcggaagcggtttccgagtcgccggccgcgcctgtcgccgaagcggcgggagcc
actgtggccgcagccgtcgcagcggtagtggtagagtcggctgtggaagcagtcgagtcc
aagccgcagcttgaggttgaagccaagccggcggtcgagtccgctccggtcgagccggtt
gtcgccgagcagcaagcgccggtcgtcatcgtggccgaagctcagcctgaggctgtagtg
gtcgagccggcggtggttgtcgaagccgagcaggctccggttgccgagccggtggcggtg
gcgccggttgtcgaggcggaagccgaggctcaatccgagcttgccgctccggaagcgctt
gttgtggaagaggccgcgccagtggtgttggcgatggtggaagaggctccggttgcggaa
gcgccggcggtcaagatcgaggcgattgccgtcgagtcgaagccggttgctgtggagtcc
aagccattggatctgggcggcctggtgatgatcgcgaccaagccggtgtctcagcagccc
tcggcgacgtcggagccggagctgccgcaaggcccgcgccgccgcgatgtcgccgcagct
gacgccgcggttgtagagccggtgcaactgatgcaggtcgaaacccgcaacggttga
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