Desulfuromonas sp. DDH964: DBW_2637
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Entry
DBW_2637 CDS
T04368
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
deu
Desulfuromonas sp. DDH964
Pathway
deu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
deu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBW_2637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
deu03019
]
DBW_2637
03009 Ribosome biogenesis [BR:
deu03009
]
DBW_2637
Enzymes [BR:
deu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DBW_2637
Messenger RNA biogenesis [BR:
deu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DBW_2637
Ribosome biogenesis [BR:
deu03009
]
Prokaryotic type
rRNA processing factors
DBW_2637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
HC2
S1
Motif
Other DBs
NCBI-ProteinID:
AMV72961
UniProt:
A0A143B9X8
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All DBs
Position
2791296..2793788
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AA seq
830 aa
AA seq
DB search
MSKKMLINATHPEESRVATVEDGLLTDLDIESEGREMTRGNIYKATVVRVEQGLQAAFID
YGAERLGFLQMGELHPSYFAAFEAGEGKGRPRINDLLRRGQEILVQVVKEERGTKGAALT
TYLSLPGRYMVLMPDSDTKGVSRKIEEETQRKKLKEAMKSLDLPPQMGYIVRTAGIGQTK
EELKRDFDYLVRVWQNIQELGRRVKAPALVYKESNLVIRSIRDYFTADMDEVLVDDPEVY
EEAKEFFQQVMPEYVRLVKLHQERRPIFSRYQIEEQIETLSRNKVPLTSGGSIVIDATEA
LVAIDVNSGKMAGEQGVEGTAYKTNIEAAAEVGRQLRLRDLGGLIVIDFIDMRDRKHIRE
VEKVLKDSLKNDKARVTVGKISQFGLLEMSRQRIKATLAEGSYLSCPNCGGSGRVKSAEA
QAVGFLRKLHAAIARGQVERVEGEVPIDVAHYLLNTKREELLEMERRYQVSIFIRARKSF
VASQFELIVHKREKGEVRDDLYAPVTAASAPHHPIAAPTLAPVAGNLPAVAESPKPAESA
AEDLPQPSAPIPAEEELSPDTAAEGDAKRKRKRRRRKKKKGEAGESGEGPEELAATATET
EDEPEEEATDLGNVAADSGEEPQKRKRKRRRRKKKTADETTTSVEATGEGTASEPPQVAA
PAPAGVTEVPEEPRPVRNRRRKPATEKPATEKPATEKPAARKPAARKPATEKPAAEKPAT
EKPAAEKPAAEKPAAEKPAAEKPAAKKPAAKKPAARKPAARKPAAEKPATEKPAAEKPEA
KRRVARKPAVKTAAAPEPQSAATGAEAGAEKERTPRKRAPRKKPEDLPSK
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaagatgctgatcaacgccacccatcccgaggaaagccgggtggcaacggtc
gaggacggcctgctgaccgacctcgacatcgagtccgaaggccgcgaaatgacccgcggc
aacatctacaaggcgaccgtggtccgcgttgagcagggactgcaggccgcctttatcgat
tacggcgccgaacgcctcggctttttgcagatgggcgaactgcacccgtcctactttgcc
gccttcgaagcaggcgaggggaaggggcggccgcgcatcaacgacctgttgcgccgcggc
caggagattctggtccaggttgtcaaggaggaacgcggcaccaaaggggcggcgctgacc
acctacctctcccttcccggtcgctacatggtgctgatgcccgactcggataccaagggg
gtctcccgcaagatcgaggaggagacgcagcgcaaaaaactgaaggaggcgatgaagtcc
ctcgacctgccaccacagatgggctacatcgtgcgcaccgccgggatcggccagaccaag
gaggaactcaagcgcgacttcgattacctggtccgggtctggcagaacatccaggaactc
ggccgccgggtcaaggccccggcgctggtctacaaggaatcgaacctggtcatccgctcg
atccgcgattactttaccgccgacatggacgaagtgctggtcgatgaccccgaggtctac
gaggaggccaaggaatttttccagcaggtgatgcccgaatatgtccgcctggtcaagctg
caccaggagcggcgcccaatcttctcccgctaccagatcgaagaacagatcgagactctc
tcgcgcaacaaggtcccgctgacctcgggaggttcgatcgtcatcgacgccaccgaggcc
ctggtcgccatcgacgtcaactcgggaaagatggccggggaacagggggtggaggggacc
gcctacaagaccaacatcgaagcggccgccgaggtcggtcgccagttgcgcctgcgtgac
ctcggcggactgatcgtcatcgacttcatcgacatgcgggaccgcaagcatatccgcgag
gtcgaaaaggtcctcaaggactccctgaaaaacgacaaggcgcgggtcaccgtcggcaag
atcagccagttcggcctgctcgaaatgagccggcagcggatcaaggcaaccctcgccgag
ggctcctatctctcctgtccgaattgcggtggcagcggccgggtcaagagtgccgaagcc
caggcggtcggctttctgcgcaagctccacgccgccatcgcccgcggccaggtcgagcgg
gtcgaaggggaagtaccgatcgacgtcgcacattacctgctcaacaccaagcgcgaagag
ttgctggagatggaacgccgctaccaggtgagcatcttcattcgtgcccgcaaatccttc
gtcgccagccagttcgagctgattgttcacaagcgggaaaagggcgaagtccgtgacgat
ctctacgcgccggttacggccgcttctgccccccaccaccccatcgctgctcccaccctg
gctcccgtcgcgggaaatctgcccgcggtggccgagagtcccaaaccggcggagagtgca
gcggaagacctcccccagccgtccgccccgatacctgcggaagaggaactttctcccgat
actgccgccgaaggcgatgcgaaacgaaaacggaaacgccggcggcgcaaaaagaagaag
ggggaagccggggaaagcggggagggccctgaggaactggccgccactgcgaccgaaacc
gaagatgagccggaggaggaagcgacagacctaggcaacgtcgctgccgattccggagaa
gaacctcagaaacgcaaacgcaaacgccggcgccgcaaaaagaaaacggcggacgaaaca
accacaagcgttgaggcaacaggcgaaggaacagcttctgagccgccgcaagtcgccgcg
ccggcacctgccggggtgaccgaagtcccggaggagccacggccggtgcgaaaccgccgt
cgcaaaccggcaaccgagaagccggcaaccgagaagccggcaaccgagaagccggcagcc
aggaagccggcagccaggaagccagcaaccgagaaaccggcagccgagaaaccagcaacc
gagaaaccggcagccgagaaaccagcagccgagaaaccagcagccgagaaaccagcagcc
gagaagccagcagccaagaagccggcagccaagaagccggcagccaggaagccggcagcc
aggaagccggcagccgaaaaacccgctactgagaaacccgctgctgaaaaacctgaagcc
aagcgacgggtggcccggaaaccggcggtcaaaactgccgcggcgccggagccccagtca
gcagcgaccggggcggaggctggcgcggagaaggaacggacgccgcggaaacgggctccc
cgcaaaaaacccgaggacctgccgtcaaaatga
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