Dickeya poaceiphila: Dpoa569_001489
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Entry
Dpoa569_001489 CDS
T06188
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dic
Dickeya poaceiphila
Pathway
dic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dpoa569_001489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dic03019
]
Dpoa569_001489
03009 Ribosome biogenesis [BR:
dic03009
]
Dpoa569_001489
Enzymes [BR:
dic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Dpoa569_001489
Messenger RNA biogenesis [BR:
dic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dpoa569_001489
Ribosome biogenesis [BR:
dic03009
]
Prokaryotic type
rRNA processing factors
Dpoa569_001489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QDX29702
UniProt:
A0A5B8I3L6
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All DBs
Position
complement(1622325..1625465)
Genome browser
AA seq
1046 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYNSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLELPDGMGLIVRTAGVGKSADAL
QWDLAFRLKHWEAIKKAAEGRAAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELA
KEHIAALGRPDFSSKIKPYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLREAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVRAIIVPHDGME
TPHYSVLRIRKGEEKQTLSYMLPQLLDAETQQSTEEQVSERRTPEQPALASFTMPDIPPG
ETTTAPAVAAPSHVEKPASSERGLFGRLVGALKGMFASSNDVKDKPVDAAQTTTDDQEQK
QERRNNRRQSGRRDRTREPRERDEQRRNKRVQPQNADVETVPTAEVPVQDKAVRDEQRRE
QRAERQRRRQEEKRQAQNEIKDLNTAAADVEDTIAEQEKPAQVMPRRQRRQLSQKVRIDD
GNTAGENIDAQSPTVSHVQESQAQDAPESVALIAGVADTENETATESNRETGLPRRSRRS
PRHLRVSGQRRRRYRDERYPAQSPMPLAQASASPEMASGKVWVRYPVAQPQQSELVEEQT
TETTNVQHSAVSELAATPVVLSSEVTNLDTALASAPLEDAPVSVPAQQEAASTEVVQPTE
ANLQQAASQSQERQEPAPQIVNTIASVEETAATVVTDNEATKSSDKPVEAQITEPPQVIH
ESVQVDTPSAVQEARIVPPVETTPVVQPRQHHATAPMTRAPAPAYIPDAPRISHWQRPAF
EFTGKGSAGGHSAVNQASAPATRPVE
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcgactcagcaggaagagttgcgtgttgccttggttgat
ggtcagcggctttacgatctggacattgaaagtcccggccatgaacagaagaaggcaaac
atttataaaggcaaaatcacccgcattgaacccagccttgaagccgcttttgttgattat
ggcgcagagcgacatggcttccttcctcttaaagaaatcgcacgcgaatacttccccagc
aactataactctcacggtcgcccgaatattaaagatgtgctccgtgaaggtcaggaagtt
atcgttcaggtggacaaagaagagcgcggcaacaaaggggctgccttaacgacgttcatt
agtctggctggcagctatctggtgctgatgccaaacaatccacgcgcaggaggcatttcc
cgtcgtattgagggtgatgaccgtactgaattgaaagaagcgcttggttcactagaacta
ccggacggcatgggactaatcgtccgtaccgccggggtgggcaaatcagccgatgcactg
cagtgggatctggcgttccgtctgaaacactgggaagctatcaaaaaagcggcggaaggc
cgagcggcaccgttcctgattcatcaggaaagtaacgtaatcgtccgcgcatttcgcgat
tatttgcgtcctgatatcggcgaaatcctcatcgataatccgaaaattctcgaattggcc
aaagagcatatcgctgcgctggggcgtccggacttcagtagcaaaatcaagccgtatact
ggtgaaattccgctgttcagccattaccagatcgaatcgcagatcgaatctgccttccag
cgtgaagtgcgcctgccttccggcggttcaatcgtcattgataccaccgaagcgctgacc
gccatcgatatcaactccgccagagccacccgcggcggcgacattgaagaaaccgccttc
aacactaacctggaagcggcagatgaaattgcccgtcagttgcgtctgcgagacctgggc
ggtttgattgttatcgactttatcgacatgaccccggtccgccatcagcgtgaggtggaa
aaccgcctgcgtgaagcggtacgacaggaccgcgctcgtattcaaatcggtcgcatttcc
cgttttggcttgctggaaatgtcgcgccaacggctaagtccgtcattaggcgaatccagt
catcacgtctgcccgcgctgtagcggcacaggtacgattcgtgacaacgaatcactgtcg
ctgtcgattctgcgcttgatcgaagaagaagcgctgaaagagaacaccaaagaagtccat
gcgattgtgccggttcctatcgcatcttatctgcttaacgaaaaacgtgaagccgttaat
gctatcgagaaacgtcaaggcggtgttcgcgccattatcgtacctcatgacggcatggaa
actccgcactactccgtacttcgcatccgtaaaggcgaggaaaaacagacgctgagctac
atgttgcctcagttgctggatgctgaaacccagcagtcaacagaggagcaggtgtctgaa
cgccggacaccggaacagccggcactggcctccttcactatgcctgatattccgccaggt
gaaaccacaaccgctccggcagtggctgcaccaagtcatgtggaaaaaccggcctcctcc
gaacgcggcttgtttggtcgccttgtcggtgcattgaagggcatgtttgcatcgtctaac
gacgttaaagacaaaccggtcgatgcggcccaaacaacgacagacgatcaggagcaaaag
caggaacgccgaaacaatcgccgtcagtctggccgacgtgatcgcacgcgcgaacctcgt
gaacgcgatgaacagcgtcgtaacaaacgcgtacagccgcaaaatgctgacgtcgaaact
gtacctacagcggaagtacccgttcaggacaaagccgttcgtgatgaacagcgccgcgag
cagcgcgccgagcgtcaacgccgccgtcaggaggaaaaacgtcaggcacagaatgaaatc
aaagatctgaacaccgctgccgctgatgttgaagatacaattgccgagcaggagaaaccc
gctcaggtgatgccacgtcgtcaacgccgccagttatctcaaaaagtacggattgacgat
ggcaacaccgccggagagaacattgatgcacagtcgccgacggtatcgcacgttcaggaa
tctcaggcacaggacgcacctgaatcagttgcattgattgctggagttgcggatacagaa
aatgaaactgcaactgaaagcaaccgtgaaactggtctgccacgccgttctcgccgttcg
cctcgtcatctgcgtgtcagtggtcagcgccgtcgccgttaccgcgatgagcgttaccct
gcacaatcgccgatgccactggcacaagcttcagcctcgccagaaatggcctccggcaaa
gtttgggttcgttatccggttgcgcagccgcaacaatcggaattggtggaggaacaaacc
actgagacgaccaatgtccagcattccgctgtgtctgaactggcagcaacaccggttgtt
ttgtcttctgaagtgacaaatctggacacggctctcgcaagcgccccgctagaggatgcc
ccggtatccgttccggcgcagcaagaagcggcatcaaccgaagtggttcagcctaccgaa
gccaacttgcaacaagcagcgtcccagtctcaagagagacaagaacctgcaccgcagatc
gtgaatacgattgccagcgttgaagagacggctgccacggtggttaccgataacgaagca
acaaaaagcagtgataaacccgttgaagcccagataactgagccaccacaggttattcat
gagtcagtgcaggttgataccccatcagcggttcaggaagcgcgcatcgtgccgccagtt
gaaaccacgccggtggtacagcctcgccagcatcacgcaactgcgccgatgacccgtgcg
ccggcaccggcctatattccggatgcgccgcgtatcagccactggcaacgcccggcgttt
gaatttacgggtaaaggttcggctggcggccatagtgccgtgaatcaagccagtgctccg
gcaacacggcccgtggaataa
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