Dyella terrae: DYST_00216
Help
Entry
DYST_00216 CDS
T08348
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dta
Dyella terrae
Pathway
dta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DYST_00216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dta03019
]
DYST_00216
03009 Ribosome biogenesis [BR:
dta03009
]
DYST_00216
Enzymes [BR:
dta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DYST_00216
Messenger RNA biogenesis [BR:
dta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DYST_00216
Ribosome biogenesis [BR:
dta03009
]
Prokaryotic type
rRNA processing factors
DYST_00216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TFIIA
Motif
Other DBs
NCBI-ProteinID:
ULU23321
LinkDB
All DBs
Position
complement(239955..243143)
Genome browser
AA seq
1062 aa
AA seq
DB search
MKRMLINATQREELRVAIVDGQNLYDLDIEIPSREQKKANIYKGRITRVEPSLEACFVDY
GAERHGFLPLKEIAREYFTPGLDPNKANIRDLIKEGHEVVVQVEKEERGNKGAALTTFIS
LAGRYMVLMPNNPKAGGVSRRIEGEDRQALKEALEHLNVPDEVGLIVRTAGLGRDAEELQ
WDLDYLLQLWKAISGAAQAQKAPFLIYQESKLFIRALRDYLRSDIGEILIDEESLYNDAR
EFMQQVMPNALRKLKMYRDDTPLFSRYQIETQIESVFDRQVRLPSGGSIVVDQTEALTAI
DINSSKATKGSDIEETAFNTNLEAAAEIARQLRIRDAGGLIVIDFIDMDSPKHQREVEER
LKEALKLDRARVQIGRISRFGLLEMSRQRLRPSLGEATQIVCPRCEGHGHVRGVESLALS
TLRLIEEHAMKDNTGQVLVQAPPSVANFMLNEKRASVVEIELRNKVHVVIVADDKLETPH
IEIQRIREADMGEHSKPSYERLTAVEASAVPKMGQTLGSSEQPVVSGIVPATPAPVREET
AAAPAPQPVAARQSAAAPAPRGGVLSRLLGWFRSPAAPASPAPTAKSEPAQANRGNQRRD
ERARSGQSGQQQGNRQQQQQRREQPQQGQPKGQQQAKGNRQQQQRQPQQAQQPPKQEQRQ
QQPKGEGQQQAQNERKQQRQEQQQRQPRQPQQAQSSTPAPDTVIAVAAASVASTTPAERP
EHVPAPEVIKEIAATAEATTEVATSGIMDPAAGTPEAEGSQSRRRRGRRGGRRRRRHEDG
SQADAQTEESADQHLDDLDDEDRSEATAPSSHAASVAAAVVATVAATAIAHTATPEQNGV
AAPADAPSATSEKVVAAAVPSAPTQAPEHVLSAVAPASFNLPALPPIPSPTAVTDAASEH
VQLDAPIAAEPFGEVLSHKDHHAVAVEPVADVTAHTTTDVSASTIHAPEAVAAVAMEEVT
HVTEASTAVESLVHLDVSPKIEPVAETLIVSQSTETAEAQQSVSVHVEPPVESIPAAVAQ
PAQGDLLAHAGLEQQSTAESAPVAPVDEESAQDVKKDASSHS
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgatcaacgcaactcagcgtgaagagttgcgcgtggccatcgtcgat
ggccagaacctttacgatctagacatcgaaatcccctcccgcgaacagaaaaaggccaat
atttacaagggccgcatcactcgcgtggagccctcccttgaagcctgcttcgtcgactac
ggcgccgaacgccacggcttcctcccgctgaaggaaatcgcccgcgagtacttcacgccg
ggcctggacccgaacaaggccaacatccgcgacctcatcaaggaaggtcacgaagtagtc
gttcaggtcgagaaggaagagcgtggcaacaaaggcgccgcgctaaccaccttcatcagc
ctcgccggccgctacatggtgctgatgccgaacaacccgaaagcgggtggcgtttcgcgc
cgcatcgagggcgaagaccgccaggcactgaaagaagcgctggagcatctcaacgtccct
gacgaggtgggtcttatcgtgcgcaccgccggccttggccgcgacgccgaagaactccag
tgggatctggactacctcctgcagctctggaaggccatctctggcgccgcacaggcgcag
aaggccccgttcctgatctatcaggaatcgaagctgttcatccgcgccttgcgtgactac
ctgcgcagcgacatcggcgagatcctcatcgatgaggagtcgctgtacaacgacgcacgc
gaattcatgcagcaggtgatgcccaacgctctgcgcaagctcaagatgtaccgcgacgac
accccgctgttctcgcgctaccagatcgaaacccagatcgagagcgtgttcgatcgccag
gtccgcctgccctccggcggctcgatcgtcgtcgaccagaccgaagccctcaccgccatc
gacatcaactcgtcgaaggccaccaagggcagcgacatcgaagaaaccgcgttcaacacc
aacctggaagcggcggcggaaatcgcccgccagctgcgcatccgcgatgccggcggcctg
atcgtgatcgacttcatcgacatggacagccccaagcaccagcgcgaagtggaagaacgc
ctcaaggaagcgctgaagctggaccgtgcccgcgtgcagatcggccgcatcagccgtttc
ggcctgctggagatgtcacgccagcgcctgcgccccagcctgggcgaagctactcagatc
gtctgcccgcgttgcgaaggccatggccatgtccgcggtgtggagtcactggctctctcg
accctgcgcctgatcgaagagcacgccatgaaggacaacaccggccaggtgctggtgcag
gccccgccgagcgtggccaacttcatgctcaacgagaagcgcgccagcgtggtcgagatc
gagctgcgcaacaaggtgcacgtggtcatcgtcgcggacgataagctcgaaaccccgcac
atcgagatccagcgcatccgtgaagccgacatgggcgagcacagcaagcccagctacgaa
cgcctcactgccgtcgaagcatccgcggttccgaagatgggtcagactctgggcagcagc
gagcagccggttgtcagcggaatcgtacccgccactccagctcccgttcgcgaagaaacc
gcagccgctccagcgccgcagccggtggccgcgcgtcagtctgctgcagccccagccccg
cgcggcggcgtgctctcccgtttgcttggctggttccgcagcccggctgcccctgcctcg
cccgctccaacagcgaagtccgagcctgctcaagcaaaccgcggcaatcagcgccgcgac
gagcgtgcccgttcgggccagagtggtcagcagcaaggtaatcgccagcagcaacagcag
cgccgcgaacagccgcagcaaggccagccgaagggccagcagcaagcaaagggcaatcgc
cagcagcaacagcgccagccgcagcaggcccaacagccgcccaagcaggaacagcgccag
cagcagcccaagggcgagggtcagcaacaggcacaaaatgagcgcaagcagcagcgccag
gagcagcaacagcgccagccgcgccagccgcagcaagcccagtccagcactcccgctccg
gacacagtaatcgccgtggccgctgcgtccgtggcaagcactaccccggccgagcgacca
gagcatgtgccggcaccggaggtgatcaaggagatcgcggccaccgccgaggccaccacc
gaagtcgcaaccagcggcatcatggaccccgcagctggcacaccggaagctgagggcagc
cagtcgcgtcgccgccgcggtcgtcgtggtggccgtcgtcgtcgtcgtcatgaggacggc
tcacaggccgacgcacagaccgaggagtccgctgaccagcatctcgacgatctggacgat
gaggaccgcagcgaagcgactgcgccgtcgtcgcacgccgcttcggtagccgcggctgtc
gtagccacggttgccgcaacagcgattgcacacacggcaacgccagaacagaacggagtg
gcagcgcccgccgacgccccgtccgcgacctctgaaaaggtggttgccgctgcagtgccg
agcgcacccacgcaggcacccgagcacgtactgagtgcggtcgcgccagcatccttcaat
ctgcctgcacttccgccaattccgtcacctaccgccgtcacagacgctgcgtcggaacac
gtgcagctcgacgctccgatcgcggccgagccctttggcgaggtcctttcgcacaaagac
caccatgctgtagccgtcgaaccggttgctgacgtcacagcacatacgacgaccgatgtc
tctgccagcaccatccatgctccggaagctgtcgctgccgtcgcaatggaagaagtcact
cacgtcacagaggcgagcaccgccgtcgagtccctggtgcacctcgatgtgtcgcccaag
atcgaacccgttgccgagacgctgatcgtttcacagtcgaccgagacagcggaggcacag
caaagtgtgtccgtgcatgtcgaaccgcctgtagaaagcatcccagcagcggttgcgcag
ccggcacaaggagacctgttggctcatgcgggcctggagcaacagtccactgccgagtct
gcaccggtcgcgccggtcgacgaagaaagcgcacaggacgtgaagaaggacgcgtcgtca
cacagctga
DBGET
integrated database retrieval system
