Desulfomonile tiedjei: Desti_2695
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Entry
Desti_2695 CDS
T02147
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dti
Desulfomonile tiedjei
Pathway
dti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desti_2695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dti03019
]
Desti_2695
03009 Ribosome biogenesis [BR:
dti03009
]
Desti_2695
Enzymes [BR:
dti01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Desti_2695
Messenger RNA biogenesis [BR:
dti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Desti_2695
Ribosome biogenesis [BR:
dti03009
]
Prokaryotic type
rRNA processing factors
Desti_2695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AFM25373
UniProt:
I4C732
LinkDB
All DBs
Position
complement(3195877..3198081)
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AA seq
734 aa
AA seq
DB search
MLKKMLINASQPEECRVAVVCDGLLEELDVQVKTREATLGNIYKGVVTRVEPSLQAVFVD
YGCDRNGFLSINDVHPSYFPESFEANRRRPRIQEVFKKEDHVLVQVNKEERNTKGACLTT
NISLAGRYLVLMPGTSLYGVSRKIEDEKERKKLKEIVKQLKLPDNMGFIIRTAGMGRTKT
ELARDLNYLMKLWEVIETHVAESEAPTLLYREHDLVIRTIREHFSPDISEILVDEKDTYK
RVRDFFHQVMPKYENLVKLYQEKRPLFNKYQLEEQLEQVYRKKIKLKSGGYIIIEQTEAM
VTVDVNSGSATKEKGIEETAFRVNLEAAPEIARQLRLRDLGGIIVIDFIDMVHKKHNQEV
EKAVKAVLKTDRAKTKILRISALGLLELSRQRLKSSLGTGEYMDCPLCDGHGRMKSPEMA
ALSVFRKIKSLLIKSTVSEVRATVPLKVGEYLLNKMRAQLVEMESQYNARVLVTVKENLP
EKEILVEAVKEQKEEIGEAPSFEPALTAQASELAVFIEEEQAEIIPEPTEEEKPATTVAE
PAEEKQPAKPKRKRRTRKKTVAAQETQIEEAEPVSEPAAEEAALSASDNGEEADITVDLH
VEKEDLDFIVKPEKEQPEETPEPVIAEEPVEVVSSVQDSEESVEVMSSISSLEETVEIVM
SAPSVEESQLVVADLQDEAPATVAEESVLSEHISTEQESDSDSDDGSQASDSGKKARKDR
KTRKSLLQSYLPFS
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgctcaaaaaaatgctcataaatgccagtcaacctgaggaatgtcgcgttgcagttgta
tgtgacggactactcgaagaactggacgttcaagtcaaaacgcgagaagcaactctcggt
aatatttacaagggagtggtcactcgtgtcgagccttctctccaagcggtatttgtcgat
tatgggtgtgatagaaacggtttcctgtcaataaatgacgttcatccatcctacttcccg
gaatcttttgaggctaatcggagacgtccgagaatccaagaggttttcaagaaggaagat
catgttctcgtacaggtgaacaaggaagaacggaacaccaaaggagcctgcctcactacg
aacatctcattggcggggcgttatctggtgcttatgccgggaaccagcctgtatggtgtt
tcccggaaaatcgaggacgaaaaagaacggaagaagttgaaggaaattgttaagcaactg
aaactgcccgacaatatgggattcatcattcgaacggcaggcatgggtcggactaaaacc
gaattggctcgtgacctgaactatttgatgaagctctgggaagtcatcgaaacccatgtg
gcagaatcggaggcaccgacacttctgtacagagagcatgatctggtgatcagaactata
cgagaacatttctccccggacatctcggaaattctcgtggatgaaaaggatacgtacaag
cgggtgagagacttctttcatcaggtgatgcccaagtacgagaatctcgtgaagctgtac
caggaaaaacgcccactctttaacaagtaccagcttgaagagcagttggaacaggtctac
cgcaagaaaataaaattaaaatccggtggttacatcatcatcgaacaaacggaagcgatg
gttactgttgatgtgaactccgggagcgcaacgaaagaaaaaggcatcgaggaaaccgct
tttcgggtcaatctggaagctgctccagaaattgcccgccagttaaggctgcgggacttg
ggcggaatcatagtcatcgatttcattgatatggtgcacaagaaacataatcaagaagtc
gaaaaagcagttaaagcggtactcaagacggatcgggccaaaaccaagattctccggatt
tcggctctcggtttactggaactctctcgacagcgcctcaaatcatctctcgggacaggc
gagtacatggactgccccttgtgcgacggacatggcaggatgaaatcgcctgaaatggca
gccctttcagttttcaggaagataaaatcgctgctgatcaagtccacagtttcggaagtt
cgagcaacagttcctctgaaagtgggtgagtaccttttgaacaagatgagggctcagctc
gtagagatggaatcgcagtacaatgcgcgcgtccttgtcactgtgaaagaaaacctcccg
gaaaaagagatactcgtagaagcggtgaaagaacagaaagaagaaataggggaagcgcct
tcctttgagcctgcgctcactgcgcaagcgtcggagcttgctgtctttatcgaagaagag
caagctgaaataatacctgagccgacggaagaagagaagccagctaccacagtggccgag
ccggccgaagagaaacaaccggcaaaaccgaagagaaaaagaagaaccagaaaaaagacg
gttgcggctcaggaaacacagatcgaagaggccgaacctgtgtccgaacctgctgcggaa
gaagcggcgttatccgcatcggataatggggaagaggcagacatcaccgtcgatctgcat
gtggaaaaagaagatctcgatttcatcgtaaaacctgagaaggaacagccggaagaaaca
ccggaaccagtaattgctgaagaaccggtcgaggttgtgtcatcagtccaggactccgaa
gaatcagtggaggtcatgtcgtcgatttcgagcctcgaagaaactgtcgagatcgtaatg
tcagcgccgagcgtcgaagagtcgcagcttgtcgtcgcagacttgcaggacgaagctcct
gcgaccgtcgcagaggaaagcgttttatctgaacatatttctacggaacaggagtccgat
tctgattccgatgatggttcccaagcatcggattccggaaaaaaagccagaaaagacaga
aagactcgcaaatctctgttgcagagctatctgccgttttcctga
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