Escherichia coli SMS-3-5 (environmental): EcSMS35_2042
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Entry
EcSMS35_2042 CDS
T00672
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ecm
Escherichia coli SMS-3-5 (environmental)
Pathway
ecm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EcSMS35_2042 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecm03019
]
EcSMS35_2042 (rne)
03009 Ribosome biogenesis [BR:
ecm03009
]
EcSMS35_2042 (rne)
Enzymes [BR:
ecm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EcSMS35_2042 (rne)
Messenger RNA biogenesis [BR:
ecm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EcSMS35_2042 (rne)
Ribosome biogenesis [BR:
ecm03009
]
Prokaryotic type
rRNA processing factors
EcSMS35_2042 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Calici_coat_C
Motif
Other DBs
NCBI-ProteinID:
ACB19323
UniProt:
B1LI60
LinkDB
All DBs
Position
2062159..2065332
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AA seq
1057 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME
TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA
PTPAEPAAPVVAPAPKAATATPASPAQPGLLSRFFSALKALFSGGEETKPAEQPAPKAEA
KPERQQDRRKPRQNNRRDRNERRDSRSERTEGSDNREENRRNRRQAQQQTVETRESRQQA
EVTEKARTTDEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR
KQRQLNQKVRYEQSVAEEAVVAPVVEETVAGEPIVQEAPAPRTELVKVPLPVVAQAAPEQ
QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG
KVWIRYPIVRPQDVQVEEQREQEEVQVQPMVTEVPVAAAVEPVVSAPVVEEVAEVVEAPV
HVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEHAEPVVEPQEETADIEEV
AETAEVVVAEPEVVAQPAAPVAAEVETVAAVEPEITVEHNHATAPMTRAPAPEYVPEAPR
HSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgttgcccttgtagat
gggcagcgtctgtatgacctggatatcgaaagtccagggcacgagcagaaaaaggcaaac
atctacaaaggtaaaatcacccgcattgaaccgagtctggaagctgcttttgttgattac
ggcgctgaacgtcacggtttcctcccactaaaagaaattgcccgcgaatatttccctgct
aactacagtgctcatggtcgtcccaacattaaagatgtgttgcgtgaaggtcaggaagtc
attgttcagatcgataaagaagagcgcggcaacaaaggcgcggcattaaccacctttatc
agtctggcgggtagctatctggttctgatgccgaacaacccgcgcgcgggtggcatttct
cgtcgtatcgaaggcgacgaccgtaccgaattaaaagaagcactggcaagccttgaactg
ccggaaggcatggggcttatcgtgcgcaccgctggcgtcggcaaatctgctgaggcgctg
caatgggatttaagcttccgtctgaaacactgggaagccatcaaaaaagccgctgaaagc
cgcccggctccgttcctgattcatcaggagagcaacgtaatcgttcgcgcattccgcgat
tacttacgccaggacatcggtgaaatccttatcgataacccgaaagtgctcgaactggca
cgtcagcatatcgctgcattaggccgcccggatttcagcagcaaaatcaaactgtacacc
ggcgagatcccgctgttcagccactaccagatcgagtcgcagatcgagtccgccttccag
cgtgaagttcgtctgccatccggtggttcgattgttatcgacagcaccgaagcgttaacg
gccatcgacatcaactccgcacgcgcgacccgcggcggcgatatcgaagaaaccgcgttt
aacactaacctcgaagctgccgatgagattgctcgtcagctgcgcctgcgtgacctcggc
ggcctgattgttatcgacttcatcgacatgacgcctgtacgccaccagcgtgcggtagaa
aatcgtctgcgtgaagcggtgcgtcaggaccgtgcgcgtattcaaatcagccatatttct
cgctttggcctgctggaaatgtcccgtcagcgtctgagcccatcactgggtgaatccagc
catcacgtctgcccgcgctgctccggtactggtaccgtgcgtgacaacgaatcgttgtcg
ctctctattctgcgtctgatcgaagaagaagcgctgaaagagaacactcaggaagttcac
gccattgttcctgtgccaatcgcgtcttacctgctgaatgaaaaacgttctgcagtgaat
gcgattgaaactcgtcaggacggcgtgcgctgtgtgattgtgccaaacgatcagatggaa
accccgcactaccatgtgctgcgcgtgcgtaaaggggaagaaactccaaccttaagctac
atgctgccgaagctgcatgaagaagcgatggcgctgccgtctgaagaagagttcgctgaa
cgtaagcgtccggaacaacctgcgctggcaacctttgccatgccggatgtgccgccagcg
ccaaccccagctgaacctgccgcgcctgttgtagccccagcacctaaagctgcaacggca
acaccagcatctcctgcacaaccagggttgttgagccgcttcttcagcgcactgaaagcg
ctgttcagcggtggtgaagaaaccaaaccggccgagcaaccagcaccgaaagcagaagcg
aaaccggaacgtcaacaggatcgtcgcaagcctcgtcagaacaaccgccgtgaccgtaat
gagcgccgcgactcccgtagtgaacgtacagaaggcagcgataatcgcgaagaaaaccgt
cgtaatcgtcgccaggcacagcagcagactgtcgagacgcgtgagagccgtcagcaggct
gaggtaacggaaaaagcgcgtaccaccgacgagcagcaagcgccgcgtcgtgaacgtagc
cgccgccgtaacgatgataaacgtcaggcgcaacaagaagcgaaggcgctgaatgttgaa
gagcaatctgttcaggaaaccgaacaggaagaacgtgtacgtccggttcagccgcgtcgt
aaacagcgtcagctcaatcagaaagtgcgttacgagcaaagcgtagccgaagaagcggta
gtcgcaccggtggttgaagaaactgtcgctggcgaaccaattgttcaggaagcgccagct
ccacgcacagaactggtgaaagtcccgctgccagtcgtagcgcaagctgcaccagaacag
caagaagagaacaatgccgataaccgtgacaacggtggcatgccgcgtcgttctcgccgc
tcgcctcgtcacctgcgcgtgagtggtcagcgtcgtcgtcgctatcgtgacgagcgttat
ccaacccaatcgccaatgccgttgaccgtagcgtgcgcgtctccggaactggcctctggc
aaagtctggatccgctatccgattgtacgtccacaagatgtacaggttgaagagcagcgc
gaacaggaagaagtacaagtgcagccgatggtgactgaggtccctgtcgccgccgctgtc
gaaccggttgttagcgcaccggttgttgaagaagtggctgaagtcgtagaagcccccgtt
cacgttgccgaaccgcaaccggaagtggttgaaacgacgcatcctgaagtaattgccgcc
gcggtaactgaacagccgcaggtgattaccgagtctgatgttgccgtagcccaggaagtt
gcagaacacgcagaaccggtagttgaaccgcaggaagagacggctgatattgaagaagtt
gccgaaactgctgaggttgtggttgctgaacctgaagttgttgctcaacctgccgcacca
gtcgcagcagaagttgaaacggtagccgcggttgaaccagagatcaccgttgagcataac
cacgctaccgcgccaatgacgcgcgctccggcaccggaatatgttccggaggcaccgcgt
cacagtgactggcagcgccctacttttgccttcgaaggcaaaggtgccgcaggaggtcat
acggcaacgcatcatgcctctgccgctcctgcgcgtccgcaacctgttgagtaa
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