Etheostoma cragini (Arkansas darter): 117944979 Help Entry 117944979         CDS       T07493                                  Symbol ptch1 Name (RefSeq) protein patched homolog 1   KO K06225   patched 1 Organism ecra  Etheostoma cragini (Arkansas darter) Pathway ecra04340   Hedgehog signaling pathway Brite KEGG Orthology (KO) [BR:ecra00001]  09130 Environmental Information Processing   09132 Signal transduction    04340 Hedgehog signaling pathway     117944979 (ptch1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Patched Sterol-sensing Motif Other DBs NCBI-GeneID:  117944979 NCBI-ProteinID:  XP_034728099 LinkDB All DBs Position 5:4430100..4481161 Genome browser AA seq 1519 aa AA seqDB search MASAANAPSEQENRDPDRPRITRRNRGDYTRNTPLDLEYLQRPSYCDAGFALEQITEGKA TGRKAPLWLRAKFQRLLFRLGCYIQKNCGKFLVVGLMIFGAFAVGLRAANLETDVEKLWV EVGGRVNQELKYTRQNIGEEAMFNPQLMIQTPREDGANVLTVDALLQHLESAIRASRVHV YLYNRQWKLENLCYKSGEIVTETPLMDQIIEKLHPCLIITPLDCFWEGAKLQSGMVYLPG KEPLQWTNFDPKEFLEDLRRANIHVEGFEEMLEKADVGHGYMDRPCLNPADPDCPLTAPN KNSTKQIDVARALSGGCHGMSRKYMHWQEELIVGGTTKNGSGPLLRKISKAVLQSVAANS SQKVLSFTTTTLEDILKSFSDISVIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVL LVTLSVAAGLGLCSLLGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFED RTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAI LSMDLYRREDRRFDIFCCFYSPCANRVIQIEPHAYLDGADGSRYSPPPSYRTPPPSYQTP PPSYSSPPPSYSSHGFAQQTQITMQSTVQLRTEYDPRTQAFYTTAEPRSQISVQPMNPAP TRSNPNNDYYSSNTSGSRSSSSNHGNLNNNNSGSRSNGGSRGSATFSHHHPAPPPAAPTS SAGSVPQCDAVSSTGQGQENNSSTRDLLSQYGEGSLGLRCLEPPCSRWTLSSFAERHYAP FLLQPITKVVVIVLFLCLLGVSLYGTTQVRDGLELTDIVPRDTSEYDFIGAQFKFFSFYN MYVVTQRADYAQKQPLLHQLHQRFHTIRYVLKEDNGQLPRMWLNYFRDWLQGLQQAFDKD WEAGRITLNSYKNGSDDGVLAYKLLVQTGRRDKAINFNLLTRQRLVDADGIINPGAFYIY LTAWVSNDPVAYAASQANIRPHPPEWLHDRTDSMPETRLSIPAAEPIEYAQFPFYLNGLR ETPQFVEAIESVRAICGNYSRQGLPSYPNGYPFLFWEQYVSLRHWLLLSISVVLACTFLV CALFLLNPWTAGIIVLVLSLMTVELFGFMGLMGIKLSAVPVVILIASVGIGVEFTVHVAL AFLTAIGDRHKRAVLALEHMFAPVLDGAFSTLLGVLMLAGSEFDFIVRYFFAVLAILTVL GVLNGLVLLPVLLSYFGPYPEVSPVDGRSRLPTPSPEAPHVVHFSVRPHHTTMATTTSGA ASDSSDTEYSSNTTVSGISQELHNHNLPSQRGQTRAEEQQYHLQTNRGRAARTDEERRAG SGHRRSARQPDLPAYSVSSSSQGCDSGPQPRATQRNSSRDPKSQLHWQALPPARPRMDAF ETATEAGGHHGSHGHREHSAGHRARSSHNPQPNHHVPRHHPNPTPYCQPITTVTASASVT VAVHPAPLSNQGPPASAYPGYTATDSYCPSGAEGPEPAFQDPHVPLDTDTGARGVHMEAM ELQDLEFEAAECNSGRRAS NT seq 4560 nt NT seq  +upstreamnt  +downstreamnt atggcctcggctgctaatgcgccctccgagcaggaaaacagagaccccgatcggccgagg ataacgcggaggaacaggggggactatacccgcaacacaccgctggatttggagtatttg cagcggccgagttactgcgatgcgggctttgctttggagcaaataaccgaggggaaggca actgggaggaaagcacctctatggctgagagcgaagttccagagacttttatttaggctg ggctgttacatacaaaagaactgcggaaagtttttggttgtgggcctcatgattttcgga gcttttgctgtgggcttaagggcagctaatttggagacggacgtggagaaactctgggta gaagttggtgggcgtgtgaaccaggaactgaagtacacgcggcagaatataggcgaggag gccatgtttaaccctcagcttatgatccagacgccgcgggaggacggagccaatgtttta actgtggatgctctcctgcagcacctggagtcagctatccgtgctagcagagttcatgtg tacctttacaacagacaatggaaattagaaaacctatgctacaaatcaggagaaatagtc acagaaacccctttgatggatcagatcatagaaaagctacatccctgcctcattatcacc cctttggactgtttctgggagggagccaagcttcagtctggaatggtctatctcccaggt aaagaaccactgcagtggaccaactttgaccctaaggagttccttgaggacttgcgacgg gcaaacattcacgtggaaggctttgaggaaatgttggaaaaagccgatgttggacacggc tacatggatagaccttgtctgaaccctgctgaccctgactgccccctcactgcacccaat aagaactcaactaagcaaatcgacgtggcacgggccttgagtggcggctgccatggtatg tccaggaagtacatgcactggcaggaggaactgatcgtaggagggaccaccaagaacggc agcggacccctgctcaggaagatcagcaaggcggtgctgcagagtgtggcggcaaattcc tctcagaaggtcttgtcttttaccaccaccactttagaagatattctcaagtctttctcg gacatcagcgtcatccgtgtggccagtggctacctgctgatgctggcctatgcgtgtttg acaatgctacggtgggactgtgccaagtctcagggggctgtggggctggcgggtgtcctc ctggtgacactgtctgtggcagctggcctgggtctctgctctctcctgggcatctccttc aatgcggccaccacacaggtgctacccttcttagctctgggtgttggagtggatgacgtc ttccttcttgctcatgccttcagtgagaccggacagaataagaggatcccattcgaggac cggacgggggagtgtctgaagaggacaggggccagcgtggctctaacttccatcagtaac gtcacagcattcttcatggcagccctcatccccatcccggcactcagagccttttctcta caggccgcggtggtggtggtgtttaactttgccatggtgttgcttatcttccccgccatc ctcagcatggacctctaccgacgagaagacagacgttttgacattttctgctgcttctac agcccgtgtgccaatcgtgtgatccagattgagcctcatgcgtacctggatggggcggac ggaagtcgctacagccctccaccttcctatcgcacccctccaccctcttatcaaacgcct cccccgagctacagcagcccccctccttcctacagcagccatggctttgcccaacagacc caaatcaccatgcagtccacggtgcagctgaggacagagtatgacccccggactcaagcc ttctacaccacggctgagcccagatctcagatctctgttcagcccatgaacccagctcca actaggagcaaccctaacaacgactattacagcagcaacacaagcggtagcaggagcagc agcagcaatcatggcaatctcaacaacaacaacagtgggagccgaagcaatgggggatct cggggttctgccaccttctcccatcaccatcctgcacctcctcctgctgccccgacttca agtgctggctcggttcctcagtgtgatgcggtctcatcgactggccagggccaggaaaac aacagctccacacgggacctgttgtcccagtacggagaaggctcgctgggcctccgctgc ctcgagcctccctgctcccgctggaccttgtcctcttttgctgaaagacactatgctccc ttccttctgcaacccatcaccaaggtggttgtgatcgtgctgttcctctgcctgctggga gtcagtctatacgggaccacccaggtgagggatggcctggagctgacagacatcgtgccc agagacaccagcgagtacgacttcatcggtgcccagttcaagttcttctccttctacaac atgtacgtggtgacgcagcgggctgattacgcccagaaacagcctctgctgcaccagctc caccaaaggttccatactattcgctacgtgctgaaggaggacaacggacagctgccgcgc atgtggcttaactactttcgggactggctgcaaggtctccagcaggcttttgacaaggat tgggaggccggccgcatcaccctcaacagctacaagaatggctctgatgatggcgtcctg gcatacaagcttttggtgcagacgggacgcagggacaaggccatcaactttaacctgctg actcgtcagaggcttgtggatgcagatgggatcatcaaccctggggctttctacatctac cttaccgcctgggtcagcaatgatcccgtggcgtacgccgcctcgcaggccaacattcgc ccgcaccctcctgagtggcttcatgaccgtactgactccatgcctgaaacacgcctcagc atcccagctgctgagcccatcgaatacgcacagttccccttctacctcaacgggctccgg gagacgccacagttcgtggaggccatcgagagcgtgcgggctatctgcggcaactatagc cgacaaggcctaccctcctaccccaacggctaccccttcctgttctgggaacagtatgtt agtctgcgccactggctcctgctgtccatcagtgttgtcctcgcctgcacctttctggtc tgtgccctcttcctgctcaacccgtggactgccggcatcatagtgttggtgctttctcta atgactgtggagctgtttggcttcatggggctgatgggaatcaagctgagtgctgtccct gtggtcatcctcatcgcctctgtaggcattggagtggagttcaccgtccatgtggccctg gcgttcctgacagccataggggatcgtcacaagcgggcagtgctggcattggagcacatg tttgctccagtactcgatggagccttctccaccttattaggtgtcctaatgctcgctggc tctgagttcgactttatcgtcaggtatttctttgctgtgttggccatcctaacagttctt ggagtactgaatggactggtccttcttccagtattactgtcatactttgggccctatcca gaggtgtctccagtcgatggtcgtagcaggttacccaccccgtccccagaagcccctcac gtggtccacttctcagttcgtcctcaccacaccaccatggccaccaccacctctggtgca gcttccgactcgtcagacacagagtacagctccaacaccacggtgtccggcattagccag gagctgcacaaccacaacctgccctcacaaagaggacaaactcgagcagaggagcagcag taccacctccagaccaacaggggcagagcagccaggacagatgaggaaaggagagcagga tcagggcataggcgctcagccagacagcctgaccttccggcctattctgtgtcttcgtcc tctcagggttgtgattctgggccccagcccagggccactcagcgtaacagcagcagggac cccaagagccagctgcactggcaggccctgcccccagcccgcccgcgcatggacgctttt gaaactgctactgaggctgggggccatcatggctcacacggccatagagaacactcagca ggccacagagcccgctcttcccacaacccacaacccaatcaccacgtcccacgccatcac cccaaccccaccccgtattgccaacccatcaccacggtaacagcgtcagcctccgtcact gtcgccgtgcacccggcccccttgtccaaccagggcccccctgcttccgcttacccagga tacactgcaacagacagttactgcccatcaggggcggaggggccggagcctgcctttcag gacccacatgtgccactggacaccgacacaggggccagaggagtccacatggaggctatg gagcttcaagatttggagtttgaggcagctgagtgtaacagtggcagacgggcaagctga

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