Escherichia coli O83 H1 NRG 857C (AIEC): NRG857_05230
Help
Entry
NRG857_05230 CDS
T02068
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eln
Escherichia coli O83:H1 NRG 857C (AIEC)
Pathway
eln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NRG857_05230 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eln03019
]
NRG857_05230 (rne)
03009 Ribosome biogenesis [BR:
eln03009
]
NRG857_05230 (rne)
Enzymes [BR:
eln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NRG857_05230 (rne)
Messenger RNA biogenesis [BR:
eln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NRG857_05230 (rne)
Ribosome biogenesis [BR:
eln03009
]
Prokaryotic type
rRNA processing factors
NRG857_05230 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ADR26473
UniProt:
A0A0H3EI94
LinkDB
All DBs
Position
complement(1115701..1118886)
Genome browser
AA seq
1061 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME
TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA
PTPAEPAAPVVAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTPKAEA
KPERQQDRRKPRQNNRRDRNERRDPRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA
EVTEKARTTDEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR
KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ
QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG
KVWIRYPIVRPQDVQVEEQREQEEVQVQPMVTEVPVAAAVEPVVSAPVVEEVAEVVETPV
QIAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEHAEPVVEPQEETADIEEV
AETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEITVEHNHATAPMTRAPAPEYVP
EAPRHSDWQRPTFTFEGKGAAGGHTATHHASAAPARPQPVE
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgttgcccttgtagat
gggcagcgtctgtatgacctggatatcgaaagtccagggcacgagcagaaaaaggcaaac
atctacaaaggtaaaatcacccgcattgaaccgagtctggaagctgcttttgttgattac
ggcgctgaacgtcacggtttcctcccactaaaagaaattgcccgcgaatatttccctgct
aactacagtgctcatggtcgtcccaacattaaagatgtgttgcgtgaaggtcaggaagtc
attgttcagatcgataaagaagagcgcggcaacaaaggcgcggcattaaccacctttatc
agtctggcgggtagctatctggttctgatgccgaacaacccgcgcgcgggcggtatttct
cgtcgtatcgaaggcgacgaccgtaccgaattaaaagaagcactggcaagccttgaactg
ccggaaggcatggggcttatcgtgcgcaccgctggtgtcggcaaatctgctgaggcgctg
caatgggatttaagcttccgtctgaaacactgggaagccatcaaaaaagccgctgaaagc
cgcccggctccgttcctgattcatcaggagagcaacgtaatcgttcgcgcattccgcgat
tacttacgtcaggatatcggcgaaatccttatcgataacccgaaagtgctcgaactggca
cgccagcatatcgctgcattaggtcgcccggatttcagcagcaaaatcaaactgtacacc
ggcgagatcccgctgttcagccactaccagatcgagtcacagattgagtccgccttccag
cgtgaagttcgtctgccatccggtggttccattgttatcgacagcaccgaagcgttaacc
gccatcgacatcaactccgcacgcgcgacccgcggcggcgatatcgaagaaaccgcgttt
aacaccaacctcgaagctgccgatgagattgctcgtcagctgcgcctgcgtgacctcggc
ggcctgattgttatcgacttcatcgacatgacgccagtacgccaccagcgtgcggtagaa
aaccgtctgcgtgaagcggtgcgtcaggaccgggcgcgtattcaaatcagccatatttct
cgctttggcctgctggaaatgtcccgtcagcgtctgagcccatcactgggtgaatccagc
catcacgtctgcccgcgctgctccggtaccggtaccgtgcgtgacaacgaatcgttgtcg
ctctctattctgcgtctgatcgaagaagaagcgctgaaagagaacactcaggaagttcac
gccattgttcctgtgccaatcgcgtcttacctgctgaatgaaaaacgttctgcagtgaat
gcgattgaaactcgtcaggacggcgtgcgctgtgtgattgtgccaaacgatcagatggaa
accccgcactaccatgtgctgcgcgtgcgtaaaggggaagaaactccaaccttaagctac
atgctgccgaagctgcatgaagaagcgatggcgctgccgtctgaagaagagttcgctgaa
cgtaagcgtccggaacaacctgcgctggcaacctttgccatgccggatgtgccgccagca
ccaacgccagctgaacctgccgcgcctgtcgtagccccagcacctaaatctgcaccggca
acaccagccgctcctgcccaacctgggctgttgagccgcttcttcggcgcactgaaagcg
ctgttcagcggtggtgaagaaaccaaaccgtccgagcaaccaacaccgaaagcagaagcg
aaaccggaacgtcaacaggatcgtcgcaagcctcgtcagaacaaccgccgtgaccgtaat
gagcgccgcgaccctcgtagtgaacgtactgaaggcagcgataatcgcgaagaaaaccgt
cgtaatcgtcgccaggcacagcagcagactgccgagacgcgtgagagccgtcagcaggca
gaggtaacggaaaaagcgcgtaccaccgacgagcagcaagcgccgcgtcgtgaacgtagc
cgccgccgtaacgatgataaacgtcaggcgcaacaagaagcgaaggcgctgaatgttgaa
gagcaatctgttcaggaaaccgaacaggaagaacgtgtacgtccggttcagccgcgtcgt
aaacagcgtcagctcaatcagaaagtgcgttacgagcaaagcgtagccgaagaagcggta
gtcgcaccggtggttgaagaaactgtcgctgccgaaccaattgttcaggaagcgccagct
ccacgcacagaactggtgaaagtcccgctgccagtcgtagcgcaaactgcaccagaacag
caagaagagaacaatgctgataaccgtgacaacggtggcatgccgcgtcgttctcgccgc
tcgcctcgtcacctgcgcgtgagtggtcagcgtcgtcgtcgctatcgtgacgagcgttat
ccaacccaatcgccaatgccgttgaccgtagcgtgcgcgtctccggaactggcctctggc
aaagtctggatccgctatccgattgtacgtccacaagatgtacaggttgaagagcagcgc
gaacaggaagaagtacaagtgcagccgatggtgactgaggtccctgtcgccgccgctgtc
gaaccggttgttagcgcgccagttgttgaagaagtggctgaagtcgtagaaacccccgtt
cagattgccgaaccgcaaccggaagtggttgaaacgacgcatcctgaagtaattgccgcc
gcggtaactgaacagccgcaggtgattaccgagtctgatgttgccgtagcccaggaagtt
gcagaacacgcagaaccggtagttgaaccgcaagaagagacggcagatattgaagaagtt
gccgaaactgctgaggttgtggttgctgaacctgaagttgttgctcaacctgccgcgcca
gtcgtcgctgaagtcgcagcagaagttgaaacggtagccgcggttgaaccagagatcacc
gttgagcataaccacgctaccgcgccaatgacgcgcgctccggcaccggaatatgttccg
gaggcaccgcgtcacagtgactggcagcgccctacttttaccttcgaaggcaaaggtgcc
gcaggtggtcatacggcaacgcatcatgcctctgccgctcctgcgcgtccgcaacctgtt
gagtaa
DBGET
integrated database retrieval system
