Escherichia coli P12b: P12B_c2023
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Entry
P12B_c2023 CDS
T02030
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
elp
Escherichia coli P12b
Pathway
elp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P12B_c2023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elp03019
]
P12B_c2023
03009 Ribosome biogenesis [BR:
elp03009
]
P12B_c2023
Enzymes [BR:
elp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
P12B_c2023
Messenger RNA biogenesis [BR:
elp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P12B_c2023
Ribosome biogenesis [BR:
elp03009
]
Prokaryotic type
rRNA processing factors
P12B_c2023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AFG40871
LinkDB
All DBs
Position
2194057..2196081
Genome browser
AA seq
674 aa
AA seq
DB search
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWD
LSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH
IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID
INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL
REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI
LRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH
YHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTP
AEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPE
RQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVT
EKDAYRRRAASAAS
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcaacgcaactcagcaggaagagttgcgcgttgcccttgtagatgggcagcgt
ctgtatgacctggatatcgaaagtccagggcacgagcagaaaaaggcaaacatctacaaa
ggtaaaatcacccgcattgaaccgagtctggaagctgcttttgttgattacggcgctgaa
cgtcacggtttcctcccactaaaagaaattgcccgcgaatatttccctgctaactacagt
gctcatggtcgtcccaacattaaagatgtgttgcgtgaaggtcaggaagtcattgttcag
atcgataaagaagagcgcggcaacaaaggcgcggcattaaccacctttatcagtctggcg
ggtagctatctggttctgatgccgaacaacccgcgcgcgggtggcatttctcgccgtatc
gaaggcgacgaccgtaccgaattaaaagaagcactggcaagccttgaactgccggaaggc
atggggcttatcgtgcgcaccgctggcgtcggcaaatctgctgaggcgctgcaatgggat
ttaagcttccgtctgaaacactgggaagccatcaaaaaagccgctgaaagccgcccggcc
ccgttcctgattcatcaggagagcaacgtaatcgttcgcgcattccgcgattacttacgt
caggacatcggcgaaatccttatcgataacccgaaagtgctcgaactggcacgtcagcat
atcgctgcattaggtcgcccggatttcagcagcaaaatcaaactgtacaccggcgagatc
ccgctgttcagccactaccagatcgagtcacagatcgagtccgccttccagcgtgaagtt
cgtctgccgtctggtggttccattgttatcgacagcaccgaagcgttaacggccatcgac
atcaactccgcacgcgcgacccgcggcggcgatatcgaagaaaccgcgtttaacactaac
ctcgaagctgccgatgagattgctcgtcagctgcgcctgcgtgacctcggcggcctgatt
gttatcgacttcatcgacatgacgccagtacgccaccagcgtgcggtagaaaaccgtctg
cgtgaagcggtgcgtcaggaccgtgcgcgtattcaaatcagccatatttctcgctttggc
ctgctggaaatgtcccgtcagcgcctgagcccatcactgggtgaatccagtcatcacgtt
tgtccgcgttgttctggtactggcaccgtgcgtgacaacgaatcgctgtcgctctctatt
ctgcgtctgatcgaagaagaagcgctgaaagagaacacccaggaagttcacgccattgtt
cctgtgccaatcgcttcttacctgctgaatgaaaaacgttctgcggtaaatgccattgaa
actcgtcaggacggtgtgcgctgtgtaattgtgccaaacgatcagatggaaaccccgcac
taccacgtgctgcgcgtgcgtaaaggggaagaaaccccaaccttaagctacatgctgccg
aagctgcatgaagaagcgatggcgctgccgtctgaagaagagttcgctgaacgtaagcgt
ccggaacaacctgcgctggcaacctttgccatgccggatgtgccgcctgcgccaacgcca
gctgaacctgccgcgcctgttgtagctccagcaccgaaagctgcaccggcaacaccagca
gctcctgcacaacctgggctgttgagccgcttcttcggcgcactgaaagcgctgttcagc
ggtggtgaagaaaccaaaccgaccgagcaaccagcaccgaaagcagaagcgaaaccggaa
cgtcaacaggatcgtcgcaagcctcgtcagaacaaccgccgtgaccgtaatgagcgccgc
gacacccgtagtgaacgtactgaaggcagcgataatcgcgaagaaaaccgtcgtaatcgt
cgccaggcacagcagcagactgccgagacgcgtgagagccgtcagcaggctgaggtaacg
gaaaaagacgcgtaccgccgacgagcagcaagcgccgcgtcgtga
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