Escherichia coli UM146: UM146_11905
Help
Entry
UM146_11905 CDS
T02000
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
elu
Escherichia coli UM146
Pathway
elu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UM146_11905 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elu03019
]
UM146_11905 (rne)
03009 Ribosome biogenesis [BR:
elu03009
]
UM146_11905 (rne)
Enzymes [BR:
elu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
UM146_11905 (rne)
Messenger RNA biogenesis [BR:
elu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UM146_11905 (rne)
Ribosome biogenesis [BR:
elu03009
]
Prokaryotic type
rRNA processing factors
UM146_11905 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ADN71750
LinkDB
All DBs
Position
2453025..2456201
Genome browser
AA seq
1058 aa
AA seq
DB search
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWD
LSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH
IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID
INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL
REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI
LRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH
YHVLRVRKGEETSTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTP
AEPAAPVVAPAPKAATATPASPAQPGLLSRFFGALKALFSGGEETKPAEQSAPKAEAKPE
RQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVT
EKARTTDEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQR
QLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQAAPEQQEE
NNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVW
IRYPIVRPQDVQVEEQHEQEEVQVQPMVTEVPVAAAVKPVVSAPVVEEVAEVVEAPVQVA
EPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEHAEPVVEPQEETADIEEVAET
AEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAP
RHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcaacgcaactcagcaggaagagttgcgcgttgcccttgtagatgggcagcgt
ctgtatgacctggatatcgaaagtccagggcacgagcagaaaaaggcaaacatctacaaa
ggtaaaatcacccgcattgaaccgagtctggaagctgcttttgttgattacggcgctgaa
cgtcacggtttcctcccgctaaaagaaattgcccgcgaatatttccctgctaactacagt
gctcatggtcgtcccaacattaaagatgtgttgcgtgaaggtcaggaagtcattgttcag
atcgataaagaagagcgcggcaacaaaggcgcggcattaaccacctttatcagtctggcg
ggtagctatctggttctgatgccgaacaacccgcgcgcgggtggtatttctcgtcgtatc
gaaggcgacgaccgtaccgaattaaaagaagcactggcaagccttgaactgccggaaggc
atggggcttatcgtgcgcaccgctggcgtcggcaaatctgctgaggcgctgcaatgggat
ttaagcttccgtctgaaacactgggaagccatcaaaaaagccgctgaaagccgcccggct
ccgttcctgattcatcaggagagcaacgtaatcgttcgcgcattccgcgattacttacgc
caggacatcggtgaaatccttatcgataacccgaaagtgctcgaactggcacgtcagcat
atcgctgcattaggccgcccggatttcagcagcaaaatcaaactgtacaccggcgagatc
ccgctgttcagccactaccagatcgagtcgcagatcgagtccgccttccagcgtgaagtt
cgtctgccatccggtggttcgattgttatcgacagcaccgaagcgttaacggccatcgac
atcaactccgcacgcgcgacccgcggcggcgatatcgaagaaaccgcgtttaacactaac
ctcgaagctgccgatgagattgctcgtcagctgcgcctgcgtgacctcggcggcctgatt
gttatcgacttcatcgacatgacgcctgtacgccaccagcgtgcggtagaaaaccgtctg
cgtgaagcggtgcgtcaggaccgtgcgcgtattcaaatcagccatatttctcgctttggc
ctgctggaaatgtcccgtcagcgcctgagcccatcactgggtgaatccagccatcacgtc
tgcccgcgctgctccggtaccggtaccgtgcgtgacaacgaatcgctgtcgctctctatt
ctgcgtctgatcgaagaagaagcgctgaaagagaacacccaggaagttcacgccattgtt
cctgtgccaatcgcttcttacctgctgaatgaaaaacgttctgcggtaaatgcgattgaa
actcgtcaggacggcgtacgctgtgtgattgtgccaaacgatcagatggaaaccccgcac
taccatgtgctgcgcgtgcgcaaaggggaagaaacctcaaccttaagctacatgctgccg
aagctgcatgaagaagcgatggcgctgccgtctgaagaagagttcgctgaacgtaagcgt
ccggaacaacctgcgctggcaacctttgccatgccggatgtgccgccagctccaacccca
gctgaacctgccgcgcctgttgtagccccagcacctaaagctgcaacggcaacaccagca
tctcctgcacaaccagggttgttgagccgcttcttcggcgcactgaaagcgctgttcagc
ggtggtgaagaaaccaaaccggccgagcaatcagcaccgaaagcagaagcgaaaccggaa
cgtcaacaggatcgtcgcaagcctcgtcagaacaaccgccgtgaccgtaatgagcgccgc
gatacccgtagtgaacgtacagaaggcagcgataatcgcgaagaaaaccgtcgtaatcgt
cgccaggcacagcagcagactgccgagacgcgtgagagccgtcagcaggcagaggtaacg
gaaaaagcgcgtaccacagacgagcagcaagcgccgcgtcgtgaacgtagccgccgccgt
aacgatgataaacgtcaggcgcaacaagaagcgaaggcgctgaatgttgaagagcaatct
gttcaggaaaccgaacaggaagaacgtgtacgtccggttcagccgcgtcgtaaacagcgt
cagctcaatcagaaagtgcgttacgagcaaagcgtagccgaagaagcggtagtcgcaccg
gtggttgaagaaactgtcgctgccgaaccaattgttcaggaagcgccagctccacgcaca
gaactggtgaaagtcccgctgccagtcgtagcgcaagctgcaccagaacagcaagaagag
aacaatgccgataaccgtgacaacggtggcatgccgcgtcgttctcgccgctcgcctcgt
cacctgcgcgtaagtggtcagcgtcgtcgtcgctatcgtgacgagcgttatccaacccag
tcgccaatgccgttgaccgtagcgtgcgcgtctccggaactggcctctggcaaagtctgg
atccgctatccaattgtacgtccgcaagatgtacaggttgaagagcagcacgaacaggaa
gaagtacaagtgcagccgatggtgactgaggtccctgtcgccgccgctgtcaaacctgtt
gttagcgcgccagttgttgaagaagtggctgaagtcgtagaagcccccgttcaggttgcc
gaaccgcaacctgaagtggttgaaacgacgcatcctgaagtgattgctgccgcggtaact
gaacagccgcaggtgattaccgagtctgatgttgccgtagcccaggaagttgcagaacac
gcagaaccggtggttgaaccgcaggaagagacggcagatattgaagaagttgccgaaact
gctgaggttgtggttgctgaacctgaagttgttgctcaacctgccgcgccagtcgtcgct
gaagtcgcagcagaagttgaaacggtagctgcggttgaacctgaggtcaccgttgagcat
aaccacgctaccgcgccgatgacgcgcgctccggcaccggaatatgttccggaagcaccg
cgtcacagtgactggcagcgccctactttcgccttcgaaggtaaaggtgccgcaggtggt
catacggcaacgcatcatgcctccgccgctcctgcgcgtccgcaacctgttgagtaa
DBGET
integrated database retrieval system
