Escherichia marmotae: C1192_06845
Help
Entry
C1192_06845 CDS
T05353
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ema
Escherichia marmotae
Pathway
ema03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ema00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1192_06845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ema03019
]
C1192_06845
03009 Ribosome biogenesis [BR:
ema03009
]
C1192_06845
Enzymes [BR:
ema01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C1192_06845
Messenger RNA biogenesis [BR:
ema03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C1192_06845
Ribosome biogenesis [BR:
ema03009
]
Prokaryotic type
rRNA processing factors
C1192_06845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AUT26860
LinkDB
All DBs
Position
1282024..1285203
Genome browser
AA seq
1059 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME
TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFPERKRPEQPALATFAMPDVPPA
PTPAETVAPAAAPAPKAAPTTPAAPAQPGLLSRLFNALKSLFSGGEETKPAEQPASKAEA
KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAEARENRQQT
DVTEKARTTDEQQAPRRERSRRRNDDKRQVQQEAKALNVEEPSVQETDQEERVRPVQPRR
KQRQLNQKVRYEQSVAEEVVVAPVVEETVATEPVMQETPAQRTELVKVPLPVVAQTAPEQ
QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPVQSPMPLTVACASPELASG
KVWIRYPVVRPQDVQVEEQREQEEVQVQPMMTEVPVAAAVEPVIAAPVVEEVTEVVEAPV
QVAEPQVVETTHPEVIAAAVTEQPQVIAEADVAVAQEVAEHAEPVVEPQEETADIEEVAE
TAEVVIAEPEVVAQPAAPVVAEVAAEVETVAPVEAEVVVEHNHATAPMTRAPAPEYVPEA
PRHSDWQRPAFAFEGKGAAGGHTATHHASAAPARPQPVE
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgttgcccttgtagat
gggcagcgtctgtatgatctggatatcgaaagtccagggcatgaacagaaaaaggcgaac
atctacaaaggtaaaatcacccgcattgaaccgagtctggaagctgcttttgttgattac
ggcgctgaacgtcacggtttcctcccactaaaagaaattgcccgcgaatatttccctgct
aactacagtgctcatggccgccccaacattaaagatgtgttgcgtgaaggtcaggaggtt
attgttcagatcgataaagaagagcgcggtaacaaaggcgcagcactgaccacctttatc
agcctggcgggtagctatctggttctgatgccgaacaacccgcgcgcgggtggcatttct
cgccgtatcgaaggcgacgaccgtaccgaattaaaagaagcactggcaagccttgaactg
cctgaaggcatggggcttatcgtgcgtactgctggcgtcggcaaatctgccgaggcgctc
cagtgggatctgagcttccgtctgaaacactgggaagcgatcaaaaaagccgctgaaagc
cgccctgctccgttcctgattcaccaggaaagcaacgttatcgttcgcgctttccgcgac
tacctgcgtcaggacataggtgaaatccttattgataacccgaaagtgctcgaactggcg
cgtcagcatatcgccgcgttgggtcgcccggatttcagcagcaaaatcaaactgtacacg
ggtgaaattccactgttcagccactaccagattgaatcgcagatcgagtccgctttccag
cgtgaagttcgtctgccgtccggtggttctattgttatcgacagcaccgaagcgttaacc
gccatcgacatcaactccgcacgcgcaacccgcggcggtgatatcgaagaaaccgcgttt
aacactaacctggaagctgctgatgagattgctcgtcagttgcgtctgcgtgacctcggc
ggcctgattgttatcgactttattgacatgacgccagtacgccaccagcgtgcggtagaa
aaccgtctgcgtgaagcggtgcgtcaggatcgtgcgcgtattcaaatcagccatatttct
cgcttcggcctgctcgagatgtcccgtcagcgccttagcccatcgctgggtgaatccagc
catcacgtctgcccgcgttgctccggtactggcaccgtgcgtgacaacgaatccctgtcg
ctctctattctgcgtctgattgaagaagaagccctgaaagagaacactcaggaagtccac
gctattgttcctgtccccattgcttcttacctgctgaacgaaaaacgttctgcggtgaat
gcaattgaaacccgtcaggacggcgtgcgctgcgtgattgtaccaaacgatcagatggaa
actccgcactaccacgtgctgcgcgtgcgtaaaggagaagagacgccgaccttaagctac
atgctgccaaaactgcatgaagaagcgatggcattaccttctgaggaagaattccctgaa
cgtaaacgcccggaacaacctgcactggcaaccttcgccatgccggatgttccaccagcg
ccaaccccggctgaaactgtagcaccggcagcagccccagcaccgaaagctgcgccgaca
acgcctgctgctccagcacaaccaggcctgttgagccgtcttttcaacgcactgaaatcg
ttgttcagcggcggcgaagaaaccaaaccggccgagcaacccgcgtcgaaagcagaagca
aaaccggagcgccaacaggatcgccgtaagcctcgccagaacaaccgccgtgaccgtaat
gaacgccgcgatacacgtagtgagcgtacagagggcagcgataatcgcgaagagaaccgt
cgtaatcgtcgccaggcacagcagcagactgccgaggctcgtgagaaccgtcagcagacc
gatgtaactgaaaaagcacgcaccactgacgagcagcaagcaccgcgtcgtgaacgtagc
cgtcgccgtaacgacgataaacgtcaggtgcaacaagaagctaaagcgctgaatgttgaa
gagccatctgttcaggaaaccgaccaggaagaacgtgtacgtccggttcaaccacgtcgt
aaacagcgtcaactgaaccaaaaagtgcgttacgagcaaagcgttgctgaagaagttgta
gtcgcaccggtggttgaagaaaccgtcgctaccgagcctgttatgcaggaaacgcctgcc
cagcgaactgaactggtaaaagttccgctgcctgtggttgcgcaaactgcgccggaacag
caagaagagaacaatgccgataaccgtgacaacggtggcatgccacgtcgttctcgtcgt
tcgcctcgtcacctgcgcgtaagtggccagcgtcgtcgccgctatcgtgacgagcgttat
ccggttcagtcaccaatgccgttaactgtagcgtgcgcatctccggaacttgcctctggc
aaagtctggatccgctacccggttgtacgtccgcaagatgtacaggttgaagaacaacgc
gagcaggaagaagtacaggttcagccgatgatgactgaagtccctgtcgccgccgctgtg
gagccagtcattgccgcgccggttgttgaagaagtaactgaagtcgtagaagcacctgtt
caggttgccgaaccgcaagtggttgaaacgacgcatcctgaagtgattgccgctgcagta
actgaacagccgcaggtgattgccgaagctgatgttgccgtagcgcaggaagttgcagag
cacgcagaaccagtggttgaaccgcaggaagagacggctgatattgaagaagttgccgaa
actgccgaggttgtgattgccgaacctgaagtcgttgctcaacctgccgcgcctgtggtc
gctgaagttgcagcagaggttgaaacagtagcccctgttgaagccgaggtagtcgtagag
cataaccacgctaccgcgccgatgacacgtgctccggcaccggaatatgttccggaagcg
ccgcgccacagtgattggcagcgtccagcctttgccttcgaaggtaaaggtgccgcaggt
ggtcatacggcgacgcatcatgcctctgccgcccctgcgcgtccgcaacctgttgagtaa
DBGET
integrated database retrieval system
