Erythrobacter mangrovi: HQR01_10085
Help
Entry
HQR01_10085 CDS
T06812
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
emv
Erythrobacter mangrovi
Pathway
emv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HQR01_10085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emv03019
]
HQR01_10085
03009 Ribosome biogenesis [BR:
emv03009
]
HQR01_10085
Enzymes [BR:
emv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HQR01_10085
Messenger RNA biogenesis [BR:
emv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HQR01_10085
Ribosome biogenesis [BR:
emv03009
]
Prokaryotic type
rRNA processing factors
HQR01_10085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QKG71685
UniProt:
A0A7D4C4Y4
LinkDB
All DBs
Position
1976224..1978911
Genome browser
AA seq
895 aa
AA seq
DB search
MATRMLIDARHQEETRVAVLKGNRIEEFDFESADHRQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPKEDREALLAAEAEVAEEEARLREEEEDRGEMPGDEYDA
EDESSEQLAEEFAEDGLEEVDTSDKDEVATIEDGHVENGFSDEDEGENGDDENDGDDADA
EAESESRGRGRKGRGRRQGKGGRSRAKEVDEARARRMALRRRYKIQDVIQRRQVLLVQVV
KEERGNKGAALTTYLSLAGRYTVLMPNSSHGGGISRKISSAQDRKRLKQIVSDLTLPKSM
GLIVRTAGLQRTKPEIKRDFDYLARLWDEIRERTLASAAPTLIHSDSDLIKRAIRDIYNK
EIEEVVVEGETGYKSAKEFMKLLMPSHARRVKQYADPVPLFQRYGAEDQLKAMYDPVVQL
KSGGYLVINPTEALVSIDINSGRSTKEHNIEQTALSTNLEAAREIARQLRLRDMAGLVVI
DFIDQEHHSNTRKVEKAMKEALKHDRARIQVGRISSFGLMEMSRQRLRTGVLEATTRDCP
HCDGTGLVRTASSAGLSALRLIEEEAAKGRGTIITLGASTEAAVYLLNEKRADLMEIEDR
YGVQVVVRPEGEDEGAKMSVSSSGPRPTTVPKFEPIVEEEEDEVELETDGDEEDDDAVEG
ETEAEAEERRSKKRRRRRGGRGRNKRRDENGEGEASESRDENDEDGEERSAESEDEDGED
RPKKRRRRGGRRRGGRGRGNRTDEQGEEDGDQLTEVSEQVAEDMAVVAGPEDSPQTAEAV
AEEEAPKPKAKRTRKKKVEEAPVEPVAETEAPAAEEPAPKPKRTRKKKVEEAPVEAAVEP
TAEEEPAPKPKRARKKKVEPEEQVTAEAEAPAPETPVAEGEEKPRRGWWQRTFGE
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggccacgcgcatgcttatcgatgcgcgccaccaggaagaaacccgggtggcggtgctc
aagggcaaccggattgaagaattcgatttcgaatctgccgatcacaggcagatcaaaggc
aacatctacctcgccaaggtaaccagggtcgaaccgtcgctgcaggcggcgttcgtggac
ttcggcggcaatcgccacggctttctagccttcagcgaaattcaccccgactactaccag
atccccaaggaagatcgcgaagcgctgctcgctgccgaggccgaggtggccgaggaagag
gcgcgcctgcgcgaagaggaagaagaccgcggcgaaatgcccggcgacgaatatgacgcg
gaggatgaaagctccgagcagctcgccgaggagttcgccgaggacgggcttgaggaggtt
gacacctccgacaaggacgaggtcgctacgatcgaagacggtcacgtcgagaatggcttc
tccgacgaggatgaaggcgagaacggcgacgacgagaatgatggcgacgacgctgacgct
gaggccgagagcgaaagccgcggtcgcgggcgcaagggtcgcggccgtcgccagggcaag
ggcggccgcagtcgcgccaaggaagtcgacgaagcccgtgccaggcgcatggccttgcgt
cgccgttacaagatccaggacgtcatccagcgccgccaggttctcctggtccaggtcgtc
aaggaagagcgcggcaacaagggtgccgcgctgacgacctatctcagcctcgccgggcgc
tacacggtgctgatgcccaatagcagccacggtggtgggatcagccgcaagatttcgagc
gcgcaggaccgcaagcgcctgaagcaaatcgtttccgacctgacgctgcctaagtcgatg
ggcctgatcgtccgaactgccggcctccagcgcaccaagccggagatcaagcgcgacttc
gattatctggcccgcctgtgggacgaaattcgcgagaggaccctggcatccgccgcgccg
acgctgatccattcggacagtgacctcatcaagcgcgccatccgcgacatctacaacaag
gaaatcgaggaagtcgtcgtcgaaggcgagaccggctacaaatcggccaaggaattcatg
aagctgctaatgccgagccacgcgcgccgggtaaagcagtacgccgatcccgttccgctt
ttccagcgctatggcgcggaagaccagctcaaggcgatgtacgacccggtcgtccagctg
aagagcggcggctatctcgtaatcaacccgaccgaagcgctggtgtcgatcgacatcaac
tcgggccgctccaccaaggagcataatatcgagcagaccgcgctctcgaccaatctcgag
gccgcgcgcgaaattgcccgccagctgcgcttgcgcgacatggctgggctcgtggtcatc
gacttcatcgaccaggagcaccactcgaacacccgcaaggtcgagaaggcaatgaaggaa
gcgctcaagcacgatcgtgcgcgcattcaggttggccggatttcgagctttggcttgatg
gaaatgagccgccagcgactgcgcaccggcgttctcgaagcaaccacgcgcgattgcccg
cactgcgacggtaccggtctggtccgcacggcttcatcggccggcctttcggcgctgcgc
ctgatcgaggaagaagcggccaagggacgcgggacgatcatcacgctgggtgcgagcacc
gaggcggcagtctacctgctcaacgagaagcgcgccgacctgatggaaatcgaggaccgc
tatggcgtccaggtcgtcgttcgccccgaaggcgaggacgaaggcgccaagatgagcgtt
tcgagctcgggcccgcgtccaacgaccgttccgaagttcgagcctatcgtcgaggaagaa
gaggacgaggtcgaactcgagaccgacggcgatgaagaagacgacgacgccgtagagggc
gaaaccgaggccgaagccgaggagcgccgcagcaagaagcgtcgccgccgtcgtggcggt
cgcggtcgcaacaagcgtcgcgacgaaaatggcgagggcgaggccagcgaaagccgggac
gaaaacgacgaggacggcgaagagcgttccgccgagagcgaggacgaggacggcgaggat
cgtccgaagaagcgccgccgtcggggcggtcgtcgcaggggcggacgtggtcggggcaat
cgtaccgacgagcagggcgaagaagacggcgaccagttgactgaggtttccgaacaggtt
gccgaggacatggcagtggtcgctggccccgaggattcgccgcagacggcggaagccgtt
gctgaggaagaagcgcccaagcccaaggccaagcgcacccgcaagaagaaggtcgaagaa
gcaccggttgaacccgtggctgagaccgaggcccccgcggcggaggaacccgcgcccaaa
ccgaagcggacccgcaagaagaaggtcgaggaagcacccgtcgaggctgctgtcgaaccg
actgctgaggaggagccagctcctaaacccaagcgggctcgtaagaagaaggtcgagccc
gaagaacaagtaactgccgaagccgaggcgcccgctcccgaaacgccagttgccgaaggc
gaggagaagccccgccgcggctggtggcaacggaccttcggcgaatag
DBGET
integrated database retrieval system
