Sinorhizobium mexicanum: FKV68_07125
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Entry
FKV68_07125 CDS
T06706
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
emx
Sinorhizobium mexicanum
Pathway
emx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FKV68_07125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emx03019
]
FKV68_07125
03009 Ribosome biogenesis [BR:
emx03009
]
FKV68_07125
Enzymes [BR:
emx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FKV68_07125
Messenger RNA biogenesis [BR:
emx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FKV68_07125
Ribosome biogenesis [BR:
emx03009
]
Prokaryotic type
rRNA processing factors
FKV68_07125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QLL63733
UniProt:
A0A859QDX2
LinkDB
All DBs
Position
complement(1496727..1499498)
Genome browser
AA seq
923 aa
AA seq
DB search
MLIDASHAEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRDDDVEPVETATEQKPSPVEAEPETV
AEVAEVSEVVEATSEAPEEAEAVVEKPKAKAKPKRARRTKAKAAEEASEAAESQDAGEEG
GSGEMAAMVDTDSISEDVDTRRRRDDDDDDDDTHDGEKEIIESVGAEDAMEEVPDRHIRK
PRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKI
TNLQDRKRLKEIARGLEVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLNST
APCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYKEAKGFMKMLMPSHAKVVQPYRDVH
PIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQTN
LEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRAVEKKLKDCLKNDRARIQVGRISHFG
LLEMSRQRIRASVLESTMQTCPHCNGTGHVRSQSSVALHVLRGIEEYLLKNTTHDITVRT
IPEIALYLLNQKRGTIMDYEQRFGVSIIIEADAHVGAQHFAIDRGEPVENPVKIEQLLHF
EPEPEEEDVVIEDDLDEEEAEETAAERPEQAKAQQADEQGGRKRKRRRRRRGKGGGQTPE
AVAAEADETLESIAGEAEEAEDEEHAPEATEAAEDGDKRKRRRRGKRGGRRNKLETAEGE
TTGDLAAEGAGEDAAAEGAAEAEPVAADTISAEAASVEIVSEEAKPAKPKRTRKKAAKAD
AKVDEAAQTAVEEKPEPVDPATEAVEEAEADLEGVKPARANRDLATIASEPVITSNVSSK
TENNEEEPPKPKKGGWWQRRGFF
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgcttatcgatgcgtctcacgcagaggagacgcgcgtcgttgtcgttcgcgggaaccgc
atagaagaattcgacttcgaatcggaacataagaagcagatccgcggcaatatttacctg
gccaaagtgaccagggtggagccttcgctccaggccgccttcgttgactacggcggcaac
cgccacgggtttctggctttcgccgaaatccatccggactattatcaaatccccctcgcc
gatcgtcaggcgcttttgaaggctgaggccgaagaggctcgccgcgacgacgatgtcgag
ccggtcgagacggcaaccgagcagaagccgtcaccggtcgaagccgagccggaaaccgtt
gcagaggttgccgaagtgtccgaggttgtcgaggcaacctccgaggcgccggaggaagcc
gaagccgtcgtcgagaagccgaaggcgaaggcaaagccgaagcgcgcccgtcgcaccaag
gcgaaggctgccgaagaagcttctgaggcggccgagagccaggacgccggcgaagagggt
ggcagcggcgagatggccgccatggtcgacaccgattcgatttccgaagacgtcgacacg
cgccgtcgccgtgacgacgatgatgatgacgacgacactcatgacggcgaaaaggaaatc
atcgaatccgtcggcgccgaagacgccatggaagaggtgcctgaccgtcacatccgcaag
ccccggaagcaatatcgcattcaggaagtgatcaagcgccggcagatcctgctggttcag
gttgccaaggaagaacgcggcaacaagggtgctgcactcaccacctatctctcgcttgcg
ggtcgctactcggttctgatgccgaacacagcgcgtggcggtggcatttcccgtaagatc
accaacctccaggaccgcaagcggctcaaggaaatcgcccgcggcctcgaagtgccgcag
ggcatgggcgtgatcctgcgcacggccggtgcgaaccgcaccaaggtcgagatcaagcgc
gacttcgaatatctgatgcgcctgtgggaaaacgtccgcacgctgacgctgaattcgacc
gcaccctgcctcgtctacgaggaaggcagcctgatcaagcgttcgatccgcgatctgtac
aacaaagacatcagcgagatcatcgtttccggcgaggaaggctacaaggaagccaagggc
ttcatgaagatgctgatgccgagccatgcgaaggtcgtgcagccctatcgcgacgtgcat
ccgatcttctcgcgctccggcatcgaggcgcagctcgatcgcatgctgcagccgcaggta
acgctgaagtcgggcggctatattatcatcaaccagaccgaagcgctcgtttcgatcgac
gtcaactccggccggtcgacccgcgagcactcgatcgaggatactgccctccagacgaac
ctggaggctgccgaggaagtggcgcggcaattgcgtctgcgcgaccttgccgggcttgtc
gtcatcgacttcatcgacatggaggagaagcgcaacaaccgcgcggtcgagaagaagctc
aaggactgcctcaagaacgatcgggcgcgcatccaggtcggccggatctcgcatttcggc
ctgctcgaaatgtcgcgccagcgcatccgtgcctcggttcttgagagcacgatgcagacc
tgcccgcactgcaacggcaccggtcacgtccgctcgcagtcgtccgtcgcactgcatgtg
ttgcgcggcatcgaggagtatctgctcaagaacacgacacacgacatcaccgtgcgcacg
atccccgaaatcgcgctgtacctgctcaaccagaagcgcggcacgatcatggattacgag
cagcgcttcggcgtctcgatcatcatcgaggccgatgctcacgtcggtgcgcagcatttc
gcgatcgaccggggcgagccggtcgagaatccggtcaagatcgagcagcttctgcatttc
gaaccggaaccggaagaagaagacgtcgtgatcgaggacgatctggacgaggaggaagcg
gaagagaccgcggccgagcgtccggagcaggcaaaggcgcagcaagccgacgaacaaggc
ggccgcaagcgcaagcgccgtcgtcgccgccgcggcaagggcggcggccagacgccggaa
gcggtcgcagctgaagctgacgagacgctggagagcatcgccggtgaagccgaagaggcc
gaggacgaggaacacgctccggaggctaccgaagcagcagaggatggcgacaagcgcaag
cgtcggcgccgcggcaagcgtggcggccgccgcaacaagctggaaacggccgaaggcgaa
accaccggcgatctcgctgcggagggtgccggcgaagacgccgccgcggaaggagctgca
gaagcggaacccgtagccgcagacacgatttcggccgaggctgcatccgtggagattgtg
tcggaagaagcgaagccggccaagccgaagcgtactcgcaagaaggccgccaaggccgat
gccaaggtcgacgaggcggcacagacagcagtcgaggagaaaccggagccggtagatcct
gcaacggaggctgtcgaggaagccgaagccgatctcgaaggcgtgaagcccgcgagggcc
aatcgtgatctggcgacgatcgcgtccgaaccggtcatcacttcgaatgtttcgagcaag
acggagaacaacgaagaggagcctccgaagccgaaaaagggcggctggtggcaacgtcgc
gggttcttctga
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