Sinorhizobium numidicum: PYH37_003570
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Entry
PYH37_003570 CDS
T09000
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
enu
Sinorhizobium numidicum
Pathway
enu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PYH37_003570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enu03019
]
PYH37_003570
03009 Ribosome biogenesis [BR:
enu03009
]
PYH37_003570
Enzymes [BR:
enu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PYH37_003570
Messenger RNA biogenesis [BR:
enu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PYH37_003570
Ribosome biogenesis [BR:
enu03009
]
Prokaryotic type
rRNA processing factors
PYH37_003570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WEX78658
LinkDB
All DBs
Position
1:complement(1411807..1414593)
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AA seq
928 aa
AA seq
DB search
MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRDDDIEPVETAADRKPASFEAE
ADAVMEPEDAEASEAGEEVAELEAPAEKPKAKAKPKRARRTKAKAAEEAAETDASAEFSE
EGSSGGEMAAMVDTDSISEEVDPRHRRDEDDDDYGHDGEKEVIESVGAEDAMEEVPDRQI
RRPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISR
KITNLQDRKRLKEIARGLEVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLN
STAPCLVYEEGSLIKRSIRDLYNKDISEIIVAGEEGYKEAKSFMKMLMPSHAKVVQPYRD
VHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQ
TNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISH
FGLLEMSRQRIRASVLESTMQTCPHCNGTGHVRSQSSVALHVLRGIEEYLLKNTTHDITV
RTIPEIALYLLNQKRSSIMDYEQRFGVSIIIEADAHVGAQHFAIDRGEPVENPVKIEQLL
HFGPEPEEDEEEIVIEDDLDEEDAEEKPAERAEQQKTQSDGQAERKRKRRRRRRGKGAAQ
APEAVASEAGDAGDDEADETDEAEEESDVRDTGTLADDSEQKRKRRRRGKRGGRRNRLEQ
SEDESEVAAEAGDEEAGGDDADRAAAASVEEVAAAPAVSAAEEVIEEPKPAKPKRSRKKA
AKPEEAAEDIDAAAGKSVEAQPEAADATAVEEAAADLEGAKPARANRDLATIASEPVITS
NAPTKTEGNDDEQAKPKKGGWWQRRGFF
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaaaatgcttatcgatgcgtctcactcagaagagacgcgcgtcgttgtcgtt
cgcgggaaccgcatagaagaattcgatttcgaatcggaacataagaagcagatccgcggc
aatatctacctggcgaaggtgaccagagtggagccgtcgctccaggcggccttcgtcgat
tacggcggcaaccgccacggttttctggctttcgccgaaatccaccccgactactaccaa
attcccctcgccgatcgtcaggcactgttgaaagcggaagccgaagaggcccgccgcgat
gacgatatcgagccggttgagaccgcagccgatcggaagcccgcatccttcgaggcggaa
gccgacgcggtgatggagccagaggacgccgaagcgagcgaggcgggagaagaagtggcc
gagctcgaagctccggcggagaagcccaaggcgaaggctaagccaaagcgtgcgcgccgc
acgaaagccaaggcggcggaggaggcggccgagacggacgcgagcgcagagttcagcgaa
gaaggcagcagcggcggcgaaatggctgccatggtcgataccgattcgatttccgaggaa
gtcgatccgcgccaccgccgggacgaagacgacgacgactacggccatgacggcgagaag
gaagtcatcgagtccgtcggtgccgaagatgcgatggaagaggttcccgaccgccagatt
cgcaggccgcgcaaacaatatcgtattcaggaagtgatcaaacgccggcaaatcctgctg
gttcaggtagcgaaggaagagcgcggcaacaagggtgcggcgctgacgacctatctctcg
ctcgcgggccgttactcggttctgatgccgaatacagcacgcggcggcggcatctcccgc
aagatcaccaacctgcaggaccgcaagcgcctgaaggaaatcgcccgcggcctcgaagtg
ccgcaaggcatgggtgtgatcctgcgtacggccggtgcgaaccgcaccaaggtcgaaatc
aagcgtgacttcgaatatctcatgcgcctatgggagaacgtccgcacactgactttgaac
tcgaccgccccctgcctggtttatgaggaaggcagcctcatcaaacgctcgatccgcgac
ctctacaacaaggatatcagcgagatcatcgtcgccggcgaagagggttacaaggaagcc
aagagcttcatgaagatgctgatgccgagccacgcgaaggtcgttcagccctatcgcgac
gtgcatccgatcttctcgcgttccggcatcgaagcgcagctcgatcgcatgctgcagccg
caggtcacgctgaaatcgggcggctatatcatcatcaaccagactgaagcgctcgtttcg
atcgacgtgaactccggtcgctccacccgcgagcactcgatcgaggacaccgcccttcag
acgaacctcgaggcagccgaggaagtggcacgacagttgcgacttcgcgacctcgccggc
ctgatcgtcatcgactttatcgacatggaagagaagcggaacaaccgctccgtcgagaag
aagctcaaggactgcctgaagaacgatcgggcgcgcatccaggtcggccggatctcgcat
ttcggtctgctcgaaatgtcgcgccagcgcattcgcgcttcggttctggaaagcacgatg
cagacctgcccgcactgcaacggcacgggccacgtccgctcgcaatcctccgtcgccttg
catgtcctgcgcggtattgaggaatatctgctcaagaacaccacgcacgacatcaccgtg
cggacgattccggaaatcgcgctctacctgctcaatcagaagcgcagctcgatcatggat
tatgaacagcgcttcggcgtttcgatcatcatcgaggccgatgcgcatgtgggcgcacag
cactttgcaatcgaccgcggcgagccggtcgaaaatccggtcaagatcgaacagctcctg
cacttcggaccagagccggaagaagatgaagaagagatcgtgatcgaggacgatctggac
gaagaggacgcggaagagaagccggccgaacgtgcggagcagcaaaagacgcagtcggac
ggtcaagctgagcgcaagcgtaagcgccgccgccgccggcgcggcaaaggcgcagctcag
gcgccggaggcagtcgcctccgaagccggggacgccggtgacgacgaggctgacgagacc
gacgaagccgaggaagagagcgacgttcgggacactgggactttagccgacgacagcgag
caaaagcgcaagcgccgccgccgtggcaagcggggcggtcgccgcaaccgactggagcag
tcggaagacgagagcgaggttgcagccgaggccggtgacgaggaggctggcggcgacgat
gcggatcgtgccgcggccgcttcggtagaagaagtcgccgcagctcccgcagtctccgcc
gcggaagaagtgatcgaagagccgaagcccgcaaagccgaagcgcagccgcaagaaggcg
gcaaagcctgaggaagccgcagaggacatcgacgcggccgccgggaaatccgtcgaggcg
cagccggaagccgcagacgcaacggctgtcgaagaagccgctgcggacctcgaaggcgca
aagccggcgcgtgcaaatcgcgacctggcaacgatcgcctccgagccggtcatcacgtcg
aacgcgccgaccaaaacagagggtaatgacgacgagcaggccaagcccaaaaagggcggc
tggtggcaacgccgcggtttcttctga
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