Candidatus Endoriftia persephone: L0Y14_07025
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Entry
L0Y14_07025 CDS
T08211
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eps
Candidatus Endoriftia persephone
Pathway
eps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0Y14_07025 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eps03019
]
L0Y14_07025 (rne)
03009 Ribosome biogenesis [BR:
eps03009
]
L0Y14_07025 (rne)
Enzymes [BR:
eps01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
L0Y14_07025 (rne)
Messenger RNA biogenesis [BR:
eps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L0Y14_07025 (rne)
Ribosome biogenesis [BR:
eps03009
]
Prokaryotic type
rRNA processing factors
L0Y14_07025 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
USF88976
UniProt:
A0A9J7A2K0
LinkDB
All DBs
Position
complement(1548362..1551364)
Genome browser
AA seq
1000 aa
AA seq
DB search
MKRMLINATQPEELRVATVDGQKLFNLDIEIPGREQKKANIYKGKITRVEPSLEAAFVEY
GAERHGFLPLKEISRSYFTEAARQSSGRVNIQEAIKEGQEVVVQVEKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGVSRRIEGQDRAELREAMSTLEIPDGMGLIVRTAGIGKNAEE
LQWDLDYLIQLWQAIEKSATAKPGPFLIYQESNIIIRSIRDYLRADIGEIVIDDAEVHAQ
AQRFISQVMPQYSSKLRLYEDEVPLFSRYQIESQIESAFERQVHLPSGGAIVIDPTEALT
SVDINSARATRGADIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMTPARNQREVE
NRLKEALKQDRARVQIGRISRFGLLEMSRQRLSPSLGEASAQVCPRCSGHGTIRSVESLA
LSILRIIEEETMKENTGKIIAQLPVDVATFLLNEKRQPIHDIEKRQGITVVLIPNPNLET
PHFNIERVRQADLAEEQETEASYRLVETHEKEIPSFARSEQKKSERPAVKAIAPRAPAPT
PQRQETPPPTTEESSFLKKIFTSIFSPKNGSAEPVENSKPEKTEEEKREPRSRGQRNGRS
RGGRKRSTSGEQRQGGRDSNRKPAGSSEAGQQPQAEPKSQESRTAEQKQRPNEPAKADEE
KSAPKPKGARRGRRGGRRRRSSGERQQPQSQSDTKQGQQSEGPPPKTNAPDSTATTDSSA
AAISKETTASSGDKGQGRQRSQRRPAPKKKVSDSTEQTTAPTPSQEKAPGPAQKSAEKPA
EKPAEKPAEKPAEKPAEKPAEKPAEKPAEKPAEKPAKKRGDEKQKDVTTKPEKAPDKPQK
PAAKKPQKPTEAPQADKPAVAEKPSPANTSSAEAPQKSTADRPKPSVQKKPQKAPSTAAD
NAPGTSEKAATNRSTKPAASQKADMPTIEKAAASRSTKPAASQKADTPTPEKAATRQTAA
APKTKLAEAGPKLVQIETKKPATSDQSKEKPAPKKGSDGG
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcaactcagccagaagagttgcgcgttgcgactgtcgat
ggacagaagctcttcaatctcgacatcgagattcccggccgggaacagaaaaaagccaac
atctacaaagggaagatcacccgagtcgaacccagcctagaggctgcgtttgtcgaatat
ggtgctgagcgccacggcttcctgccgctgaaggagatctcccgcagctacttcactgaa
gcagcccgccaatccagcggacgcgtcaacatccaggaggcgataaaagagggccaggag
gtcgtcgtccaggtggagaaggaggagcgcgggaataaaggcgccgcactgaccaccttc
atctcactggccggccgttatctggtattgatgcctaacaacccccgcgccggcggcgtc
tcccgccgcatcgaaggccaggaccgggccgagctccgcgaggcgatgagcacgctcgag
atccctgacggcatgggtctgatcgtacgcactgccggcatcggcaagaacgccgaggag
ttgcaatgggatctggactacctgatccagctctggcaggcgattgaaaagtcggccacg
gccaaacccggccctttcctgatctaccaggagagcaacatcatcatccgctcgatccgc
gactacctgcgcgcggatatcggcgagattgtcatcgacgacgcagaggtccacgcccag
gcccagcgcttcatcagccaggtaatgccgcagtacagcagtaagctgcgtctctacgag
gacgaggtaccgctgttcagccgctatcagatcgagagccagattgaatccgccttcgag
cggcaggtgcacctgccctccggcggcgccatcgtgatcgaccccaccgaggcgctgacc
tcggtcgacatcaactcggcccgcgccaccaggggtgccgatatcgaagagaccgcactc
aacaccaatcttgaggcggcggatgagatcgcccgtcagctgcgcctgcgggatcttggc
ggcctgtttgtcatcgacttcatcgacatgacccccgcacgcaaccagcgtgaggtggaa
aaccgcctcaaggaggccctcaagcaggaccgtgcgcgggttcagatcgggcgcatctcc
cgcttcggcctattagagatgtcacgccagcggctgagcccctcgcttggtgaagccagc
gctcaggtctgcccacgctgcagcgggcacggcaccatccgcagcgtggagtcgctggcc
ctgtcgatcctgcgcatcatcgaagaagagacgatgaaggagaataccggcaagatcatc
gcccagttgccggtagatgtggccaccttcctactgaacgaaaaacgtcagccgatccac
gacatagaaaaacgtcaagggatcactgtggtgctgatccccaatcccaacctggaaacc
ccccacttcaatatcgaacgagtccgacaggctgatcttgcagaggagcaagagaccgaa
gcgagctatcgcctggtcgaaacccacgagaaggagatacccagcttcgcccgctctgaa
cagaaaaagagcgaacggcctgcggtaaaggcgatcgctcccagagcgcccgctcccacc
ccacagcgccaagagacacccccaccgacgaccgaagagagtagtttcctgaaaaaaatc
ttcaccagcatcttctcccccaagaacgggtcagccgagcccgtcgagaacagcaaaccg
gagaagactgaagaggagaagcgtgagccccgcagcagaggccaacgcaatgggcgttcc
cgcggaggacgcaaacgctcaaccagcggcgagcagcgtcaaggtggacgtgacagcaat
agaaaaccagctggaagcagtgaggccggccagcaaccccaggctgagccaaagagccaa
gagtcccgcacagcggaacagaagcagcgaccgaacgagccagccaaggcagatgaagag
aagagcgctcccaagcccaagggcgcacgccgcggcagacgcggtggtcgtcggcgccgt
tcctcaggcgaacggcaacagccgcagagccagagtgataccaaacaggggcagcaatca
gaaggcccccccccaaaaacaaacgctccagacagcactgccacaactgatagcagcgca
gcagcgattagcaaagagacgacagcctccagcggcgacaaaggacagggccgtcaacgc
agtcagcgccgtccggctcccaagaaaaaagtcagcgattcgacggagcagacaactgca
ccgactcccagtcaggagaaggctccagggcctgcccagaaatccgctgagaagcccgct
gagaagcccgctgagaagcccgctgagaagcccgctgagaagcccgctgagaagcccgct
gagaagcccgctgagaagcccgctgagaagcccgctgaaaagcccgctaagaagcgcggt
gatgagaaacaaaaggatgtaacaaccaagccagaaaaagccccggacaaaccgcaaaaa
ccggcagccaaaaagccacagaagccaactgaagcgccgcaagcagataagccggctgtg
gcagaaaagccatcaccggccaacacatcttcggctgaggccccgcagaagagcactgct
gatcggcccaagccgtcggtgcagaagaagcctcaaaaagcgccctctacagcggcagat
aacgcccctggcacgtctgaaaaagcagcgaccaatcgctcgaccaaaccggcggccagt
caaaaagcagacatgccgacgattgaaaaagcagctgccagtcgttcgaccaaaccggca
gccagccaaaaagcagacacgccgacacccgaaaaagccgccactcggcagaccgccgcg
gcacccaaaacaaaacttgcagaggccggtcccaaactggtgcagatagagaccaaaaag
ccagcaacgtccgatcagagcaaggaaaaacctgccccgaaaaaaggcagtgatggtggg
taa
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