Escherichia ruysiae: OSH18_04365
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Entry
OSH18_04365 CDS
T09019
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eruy
Escherichia ruysiae
Pathway
eruy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eruy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSH18_04365 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eruy03019
]
OSH18_04365 (rne)
03009 Ribosome biogenesis [BR:
eruy03009
]
OSH18_04365 (rne)
Enzymes [BR:
eruy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OSH18_04365 (rne)
Messenger RNA biogenesis [BR:
eruy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OSH18_04365 (rne)
Ribosome biogenesis [BR:
eruy03009
]
Prokaryotic type
rRNA processing factors
OSH18_04365 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
WGM53392
LinkDB
All DBs
Position
873541..876726
Genome browser
AA seq
1061 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME
TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA
PAPAEPVTPAAATAPKAAPTTPAAPAQPGLLSRLFSALKSLFSGGEETKPTEQPAPKAET
KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQSQQQTAETRESRQQA
DVTEKARTTDEQQTPRRERSRRRNDDKRQVQQEAKALNVEEQSVQETEQEERVRPVQPRR
KQRQLNQKVRYEQSVAEEVVAAPVVEETVAAEPVMQEASAQRTELVKVPLPVVAQTAPEQ
QEDNNVDNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPVQSPMPLTVACASPELASG
KVWIRYPVVRPQDVQVEEQREQEEVQMQPMVTEVPVAAAVEPVVAAPVIEEVTETIEAPV
PVAQAQPEVVETTHPEVIAAAVTEQPQVIAEADVAVAQDVAEHAEPVVEPQEETADIEEV
AETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVP
EAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgttgcccttgtagat
gggcagcgtctgtatgatctggatatcgaaagtccagggcatgaacagaaaaaggcgaac
atctacaaaggtaaaatcacccgcattgaaccgagtctggaagctgcttttgttgattac
ggcgctgaacgtcacggtttcctcccactaaaagaaattgcccgcgaatatttccctgct
aattacagtgctcatggccgtcctaacattaaagatgtgttacgcgaaggtcaggaagtc
attgttcagatcgataaagaagagcgcggcaacaaaggcgcggcattaaccacttttatc
agcctggcgggtagctatctggttctgatgccgaacaacccgcgcgcgggtggcatttct
cgccgtatcgaaggcgacgaccgtaccgaattaaaagaagcactggcgagccttgaactg
ccggaaggcatggggcttatcgtgcgcaccgctggcgtcggcaaatctgctgaggcgctg
caatgggatttaagcttccgcctgaaacactgggaagccatcaaaaaagccgctgaaagc
cgcccagctccgttcctgatccatcaggagagcaatgttatcgttcgcgcattccgcgat
tacttacgccaggacatcggcgaaatccttatcgataatccgaaagtactcgaactggcg
cgtcagcatatcgccgcgttgggtcgcccggatttcagcagcaaaatcaaactgtacacg
ggtgaaattcccctgttcagccactaccagatcgaatcgcagatcgagtccgccttccag
cgtgaagtccgtctgccgtctggtggctccattgttatcgacagcaccgaagcgttaacc
gccatcgacatcaactccgcgcgtgcaactcgcggcggcgatatcgaagaaactgcattt
aacactaacctggaagcagccgatgagattgctcgtcagctacgcctgcgtgacctcggc
ggtctgattgttatcgacttcatcgacatgacgcctgtacgccatcagcgcgcggtggaa
aaccgtctgcgtgaagcggtacgtcaggatcgtgcgcgtattcaaatcagccatatttct
cgctttggcctgctcgagatgtcccgtcagcgcctgagcccgtcgctgggtgaatccagc
catcacgtctgcccgcgttgctccggtactggcaccgtgcgtgataatgaatccctgtcg
ctctctattctgcgtttgattgaagaagaagccctgaaagagaacacccaggaagtccac
gccattgttcctgtccctattgcctcttacctgctgaacgaaaaacgttctgcggtaaat
gcaattgaaacccgtcaggacggcgtgcgctgtgtgattgtaccaaacgatcagatggaa
accccgcactaccacgtactgcgcgtgcgtaaaggggaagagacgccgaccttaagctac
atgctgccgaagctgcatgaagaagcaatggcgctgccgtcagaagaagagtttgcggag
cgtaaacgtccggaacaacctgcactggcgacttttgccatgccggatgtgccaccagct
ccagccccggcagaacctgtaacgcctgcggcagccacagcgcctaaagccgcgccgaca
acacctgctgctcctgcacaaccaggcctgttaagccgtctcttcagcgccctgaaatcg
ctgttcagcggtggtgaagaaaccaaaccaaccgagcaacctgcaccaaaagcagaaacg
aaaccggaacgtcaacaggatcgccgtaagcctcgtcagaacaatcgccgtgaccgtaat
gaacgccgcgacacgcgtagcgaacgtacagagggtagcgataatcgcgaagaaaaccgt
cgtaatcgtcgccagtcacagcagcaaactgccgagacgcgtgagagccgtcagcaggct
gatgtaacagaaaaagcgcgtaccaccgacgagcagcaaacaccgcgtcgtgagcgtagt
cgtcgccgcaacgatgataaacgtcaggtacaacaagaagcgaaggcactgaatgttgag
gagcaatctgttcaggaaacagaacaggaggagcgtgtacgtccggttcaaccgcgtcgt
aaacagcgccagctaaatcagaaagtgcgttacgagcaaagcgttgcggaagaagtggta
gccgctccggtggttgaagaaaccgtcgccgccgaacctgttatgcaggaagcgtctgcc
caacgtactgaactggtgaaagtaccattgccagtcgttgcacaaactgcgccggaacaa
caagaagataacaatgtcgataaccgtgacaacggcggtatgccgcgtcgttctcgtcgc
tcgcctcgccatctgcgcgtgagtggtcagcgtcgtcgtcgctatcgtgacgagcgttat
ccggttcagtcaccaatgccgttaaccgtagcgtgtgcgtctccggaactggcctctggc
aaagtctggatccgctatccggttgtacgtccgcaagatgtacaggttgaagagcaacgc
gaacaggaagaagtacagatgcagccgatggtgactgaagtccctgtcgccgccgctgtc
gaacctgtcgttgccgcgccggttattgaagaagtgaccgaaactatagaagcaccggtt
ccggttgcacaagcgcaaccggaagtggttgaaacgacgcatcctgaagtgattgccgca
gcggtaactgaacagccacaggtgattgccgaggctgatgttgctgtagcgcaggacgtt
gcagaacacgcggaaccggtagttgaaccgcaggaagagacggcagatattgaagaagtt
gccgaaactgccgaggttgtagttgccgaacctgaagttgtcgctcaacctgccgcacct
gtggtcgctgaagtcgcagcagaagttgaaacggtagccgctgttgaacctgaggtcacc
gttgagcataaccacgctaccgcgccgatgacacgcgctccggcaccggaatatgttccg
gaagctccgcgtcacagtgactggcagcgccctacttttgccttcgaaggcaaaggtgcc
gcaggtggtcatacggcaacgcatcatgcctctgccgctcctgcgcgtccgcaacctgtt
gagtaa
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