Candidatus Fervidibacter sacchari: Q2T83_03085
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Entry
Q2T83_03085 CDS
T09227
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fsh
Candidatus Fervidibacter sacchari
Brite
KEGG Orthology (KO) [BR:
fsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fsh03016
]
Q2T83_03085
Enzymes [BR:
fsh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Q2T83_03085
Transfer RNA biogenesis [BR:
fsh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Q2T83_03085
Prokaryotic type
tRNA splicing ligases
Q2T83_03085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WKU16817
LinkDB
All DBs
Position
complement(695566..697035)
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AA seq
489 aa
AA seq
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MADRVWTGPLEKIDDCRWRVPKTYKREMRVDGILYATEKMLDHIKRDMALEQLANVATLP
GILKYSLAMPDIHWGYGFPIGGVAAMDAETGVISPGGVGYDINCGVRLLRTDLTIDDVKP
KIEELVETLFRFVPAGVGSEGAFVVKNRDEFEKVLVEGAKWAVYRRHFGVPEDLECIEEN
GCIEGADPDKVSKKAIERGMPQLGTLGSGNHFLEVQVVEEIYNPRIAKAMGIEQVGQITV
MIHCGSRGFGHQVCDDYLEVMELAIRKYGIWLPDRQLACAPFKSPEGQNYFVAMKCAVNY
AFANRQCITHNVRQAFEKVFGTSWEKLGIRVVYDVAHNIAKLEEHEVDGERKKVIVHRKG
ATRAFPPGHPAIPERYREVGQPVLIPGSMGTGSFLLVGTEGAMKETFGSTCHGAGRVMSR
HAAKRSTNANELLQRLRKQGIIVKGATKATVVEETPEAYKDVDEVTKCVHQAGISIRVAR
MRPIGVVKG
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccgcgtatggactggaccgctggagaagattgacgattgccgctggcgtgtc
cccaaaacttacaagcgcgaaatgagggttgacggcattttgtatgcgaccgagaaaatg
cttgaccacatcaagcgagatatggctttggagcaactggcaaatgtcgccacccttccg
ggcattctcaagtattcgctggctatgcctgacatccactggggctatggtttccccatc
ggtggcgtcgctgccatggacgccgaaacaggtgtcatttcgccgggcggtgtcggctac
gatatcaactgcggtgtcaggttgttgcggaccgatttgaccattgacgatgttaagccg
aagattgaggaactggtggagactctgttccgtttcgtcccagcaggtgttggttctgaa
ggcgctttcgttgtgaaaaaccgagacgaatttgagaaggttctcgttgaaggcgcaaag
tgggctgtatacagaaggcacttcggtgtccccgaggacttggagtgcattgaggaaaac
gggtgcattgaaggggctgacccagacaaggtgagcaaaaaggcaattgagcgaggaatg
ccgcaactcgggactctgggcagcggcaaccacttcttggaagtccaagtcgttgaagaa
atctacaacccgcgcatcgcaaaggctatgggcattgaacaagtcggacaaatcaccgtg
atgattcactgtggctcgcgcggtttcggtcatcaagtttgcgatgattaccttgaggtc
atggaactggctatccgaaagtatgggatttggttgccagacaggcagttggcttgtgct
cctttcaagtcgcctgaaggtcagaactactttgtcgcgatgaagtgtgctgttaactac
gctttcgccaaccgacaatgcatcacccacaatgtccgtcaagcctttgagaaagttttc
gggacaagttgggagaaactgggcattcgagtcgtttacgatgtcgcccataacatcgcc
aaactggaagagcacgaggttgatggtgaacggaagaaagtgatagtccacagaaaagga
gcaactcgtgccttcccgcccggacatcctgccattccagaaaggtatcgcgaggtgggt
caacctgtcctcatcccaggcagcatgggaacaggctcattccttttggttgggacagag
ggagcgatgaaggagactttcggtagcacatgtcacggggcaggtcgggtaatgagcaga
catgcggcaaaacgctctaccaacgctaacgaacttctacaacgcttgcgcaaacaaggt
attattgtcaagggcgccacgaaagcgacggtggttgaggaaactcccgaagcctacaag
gatgttgacgaagtgaccaaatgcgtccaccaagcaggcatctcaatccgagtggcaaga
atgagaccaatcggcgttgtcaagggctaa
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