Gilvimarinus sp. DA14: NHM04_01745
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Entry
NHM04_01745 CDS
T08272
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gil
Gilvimarinus sp. DA14
Pathway
gil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHM04_01745 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gil03019
]
NHM04_01745 (rne)
03009 Ribosome biogenesis [BR:
gil03009
]
NHM04_01745 (rne)
Enzymes [BR:
gil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NHM04_01745 (rne)
Messenger RNA biogenesis [BR:
gil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NHM04_01745 (rne)
Ribosome biogenesis [BR:
gil03009
]
Prokaryotic type
rRNA processing factors
NHM04_01745 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UTF60544
UniProt:
A0A9J7A880
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All DBs
Position
complement(422431..425412)
Genome browser
AA seq
993 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQWLYDLDIENRNREQKKANIYKGRITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFAKSPGDSDGRVKIKDVVKEGTEVIVQVDKEERGNKGAALTTF
VSLAGRYLVLMPNNPRAGGISRRIEGEDRAELRDALSQIEIPNGMGIIIRTAGVGRSAEE
LQWDLNYLLQLWESIDQGAQNCKAPTFLFQESNVIIRAIRDYLRQDIGEVIVDNKESFDL
ASGFIRQVMPNFGSKVKLYQDDIPLFNRYQIESQIETAFQREVKLPSGGSIVIDVTEALV
SIDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQASRNQREVE
NRIRDALAMDRARVQIGRISRFGLLEMSRQRLRPSLGEVHSKVCPRCNGQGTIRGTRSLA
LSILRLVEEEAQKERSAEIRAIAPTSVATYLLNEKRKTIFSIEQRNNTRVVVVPNNEMTT
PHFEVQRLRDDDEGTLETSYKIVASEEHTEHEQITEAAPVKLPQPLVQPTAPAEQAPAPV
AKAEPGLIARLISWLQELFEGEEKPEPAPKHKRKGGDQRSRRSRPQNRQRRQDESDDKSK
KGKKEPSESKDRNSKDKDNGEQRSESRPNRNRRGRNRNRNRNRDEQRNNQPEGKNSDSNS
QASPQNPAEENQSSSGNDEQRPAKRPSGRRRGNQRRRRREDSTSNQELHAQVNQAIDAQE
AAVQETPTASDKASVTSDKAKEAGAPKAADGNQQPQAKMERDQERKPAEQVSKAEVRSSE
KSAEEKAPAEKPEAEVQEPVKVEADAVTKEGDTSTEKPVAEKEKQDEIDATAAAEQASEQ
PVTAANPVSEPSQNDTKVEAEAAVVQETPIAQPQADTPSPEEPAPAQAEITEAKANETVA
EDEEKTSAAKGQEKTLTIASKDGSQTSVRKFSRAQNDPRVTPKPVQQVRILTETRSRPLP
RALDTSQPARVNHNPRPLQRPSNDPRVNGKPAQ
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgataaacgctacccagccagaagagctgcgcgtagcactggttgac
ggccaatggctgtacgacctggatattgaaaaccgcaaccgcgaacagaaaaaagccaat
atttacaaaggccgaatcacccgggttgaacccagcctcgaggccgcgtttgttgattac
ggcgccgagcgtcacggctttttaccactcaaagaaatctcccgcgaatattttgctaaa
tctcccggtgattccgacggccgcgtcaagattaaagacgttgttaaagaaggcacagag
gttatcgttcaagtcgataaagaagagcgcggcaacaaaggcgcagccctcacgactttt
gtcagtttggccggacgctatctggttttaatgcccaacaaccctcgcgccggcggcatc
tcgcgccgcatcgaaggtgaagatcgcgccgaattgcgcgacgccctgagccagattgaa
atccccaatggcatgggcattattatccgcaccgcgggcgtgggccgcagtgccgaagaa
ttgcagtgggatttaaactacctgctacagctttgggagtcgatcgatcagggagcgcaa
aactgtaaggcccctactttcttattccaggaaagcaacgttatcatccgcgccattcgc
gattacctgcgccaggatatcggggaagttatcgtcgacaacaaagaatctttcgacctg
gcctcaggctttattcgccaagtcatgcctaattttggcagcaaggttaagctatatcag
gacgacatccccctatttaaccgttaccaaatcgaaagccagatcgagaccgcctttcag
cgcgaagtaaagctaccttctggcggctcgattgtgatcgatgtgaccgaggcactggtt
tctatcgacatcaactcctcgcgcgccaccaaaggcggcgacattgaagagactgcactg
caaaccaacctagaagcagccgatgaaattgcgcgccaattgcgcttgcgcgatatgggc
ggcctggtggttatcgactttatcgacatgcaggcaagtcgcaatcagcgcgaggtagaa
aaccgcattcgcgatgccctggcaatggatcgcgcgcgcgtacagattggccgcatctcg
cgttttggcctactggaaatgtcgcgtcagcgtctgcgcccaagcttgggcgaagtacat
tccaaggtttgcccgcgctgcaatggccagggcaccattcgcggcactcgctcgctggca
ctgtctattttgcgtctggtagaggaagaggcgcagaaagagcgcagcgcagaaattcgc
gccattgcgccaacgtctgtagccacctatctgctgaacgaaaagcgcaaaaccattttc
agcattgagcagcgcaacaacacccgtgtagtagttgtacccaacaatgagatgaccact
ccgcatttcgaagtacaacgacttcgcgatgatgacgaaggcaccctggaaaccagctat
aagattgttgcttctgaagagcacaccgaacacgagcagattactgaggccgctcccgtt
aagctgcctcagccactggttcaacctactgcacctgccgagcaggcgcccgcacctgtg
gccaaggccgagccgggcctaattgctcgtcttatcagctggctgcaggaactgttcgaa
ggtgaggagaagcccgagcccgcccccaagcacaagcgcaaaggtggcgatcaacgctcg
cgccgcagtcgcccacagaaccgtcaacgccgtcaggacgagagcgacgacaagagcaaa
aaaggcaaaaaagagccaagcgaaagcaaagaccgcaatagcaaagataaagataacggc
gagcagcgctcagagtcgcgccccaaccgcaatcgtcgcggacgcaaccgcaatcgcaac
cgcaaccgcgatgagcagcgcaacaatcaacccgagggtaaaaacagcgacagcaatagc
caggcttcgccacaaaacccggcggaggaaaaccagagcagctcaggcaatgatgagcaa
cgcccggccaaacgcccttccggtcgccgccgcggcaaccaacgccgccgtcgccgtgag
gacagcacctctaaccaagagctgcacgcccaggtcaaccaggcgatcgatgctcaagaa
gctgccgtacaagaaacgccaacagccagcgacaaagcatcagtaacgagcgacaaggca
aaagaagccggcgccccaaaagcggccgacggcaatcagcagccgcaagctaagatggag
cgcgatcaagaacgcaagcccgccgaacaagtcagtaaggccgaagttagatcgtcagag
aagtctgcagaagaaaaggctcccgccgagaaacctgaggcagaagtacaggagccggtc
aaggtcgaagcggatgccgtgactaaagaaggcgacacctcgacagagaagccggtagcc
gaaaaggaaaagcaagacgagatcgacgcaactgcagcggcagaacaagcaagcgaacag
cctgtcaccgcagcaaaccctgtgtcggagccttcgcagaacgacaccaaggtagaggcg
gaagcagccgttgtgcaagaaacaccgatagcgcagcctcaggcggacacaccttcaccc
gaggagccagcacctgcgcaagctgaaatcactgaagcgaaagccaacgaaacggttgca
gaagacgaagagaaaacctctgctgcgaaagggcaagaaaaaaccctgacaatcgcgagc
aaagatggctcccagacctcagtgcgcaaattcagcagagcgcaaaacgatccacgtgtt
acccccaagcctgtgcagcaggtgcggattctgaccgaaactcgcagtcgccctttgccg
agagcgctggataccagtcagccggcacgggtaaaccacaaccctcggccattgcagcgt
cccagcaatgacccgagggtcaacggcaagcctgctcagtaa
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