Geoalkalibacter subterraneus: GSUB_15505
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Entry
GSUB_15505 CDS
T03585
Name
(GenBank) tRNA-splicing ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gsb
Geoalkalibacter subterraneus
Brite
KEGG Orthology (KO) [BR:
gsb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gsb03016
]
GSUB_15505
Enzymes [BR:
gsb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GSUB_15505
Transfer RNA biogenesis [BR:
gsb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GSUB_15505
Prokaryotic type
tRNA splicing ligases
GSUB_15505
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
NAD_binding_9
Motif
Other DBs
NCBI-ProteinID:
AJF07674
UniProt:
A0A0B5FSP4
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All DBs
Position
3298254..3299699
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AA seq
481 aa
AA seq
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MPIKLQQIDPCRWRIPREGKMRVEGLVFADRAMIEVLQKEQALEQVRNVATLPGIVGRSI
AMPDIHWGYGFPIGGVAAFDPEDGGVVSPGGVGYDINCGVRLLRSELEAEEIRPHLKELA
DALFRNVPSGVGSHRRDLSLAPHETRKVLEQGAAWAVKNGFGSAQDLDHIEERGTIAGAD
PEVVSERALERGRNQLGTLGSGNHFLEVQRVDEVLDSEAANALGLFQDQVTVSIHTGSRG
LGYQVCDDHLKMMLRAAAKYGIELPDRQLCCAPLESPEGRQYLAAMAGAANFAFANRQLI
THWVRETFEQVLRTGPSQLRMSLIYDVCHNIAKWETHQVEGRARRLCVHRKGATRAFPPG
HPETPELYREVGQPVLIPGDMGRCSYVLVGTEDAFNETFGSTCHGAGRVLSRHAARKLAR
RRDIPADLAAKGILIRAAGRATMAEEISEAYKDVSEVVEVVRRAGIGRIVARLVPMAVVK
G
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcccatcaagctccaacagatcgacccctgccgctggcgcatccctcgtgaggggaag
atgcgtgtcgaggggctggtgtttgccgatcgggccatgatcgaggtgctgcagaaagag
caggcgctggagcaggtgcgcaatgtggcgacgctaccgggcattgtcggccgctccatc
gctatgcccgatatccactggggctacggcttccccatcggcggggtggcggcgtttgat
ccggaggatggcggcgtggtgtctccgggaggggtcggctacgatatcaactgcggggtc
cgactgctgcgcagcgagctggaagcggaggagatccgacctcacctcaaggagctggct
gatgccctgttccgcaatgtgccctccggggtcggctctcatcgccgcgacttgagcctg
gcaccgcatgaaacacgcaaggtgttggagcagggtgcggcctgggcggtgaaaaacggt
ttcggttcggcgcaggatctcgatcacatcgaggagcgcggcaccatcgccggcgccgac
ccggaggttgtttccgagcgtgcgctggagcgcggacgcaaccagctcggtacgctgggc
tccggcaatcattttcttgaagtgcagcgggtcgacgaggtgcttgattccgaggctgca
aacgctctggggcttttccaggaccaggtgacggtctccatccacacgggcagccgtggg
ctgggctaccaggtgtgcgacgatcatctcaagatgatgctgcgcgcggcggccaaatac
ggcatcgagctgccggaccgccagctgtgctgcgcgccgctggagagccccgaagggcgg
caatacctggcggcaatggccggcgcggccaactttgcctttgccaaccgccagctcatc
acgcactgggtgcgtgaaaccttcgagcaggtgctgcgcaccgggccgtcacagctgcgc
atgagcctgatctacgatgtgtgccacaacatcgccaagtgggaaacgcatcaggttgag
ggccgggcgcggcgattgtgcgtgcatcgcaagggggctacgcgggcctttccgccggga
caccccgagacgccggaactctaccgcgaggtgggccagccggtgctgatccccggcgat
atggggcgctgctcctacgtgctggtgggcactgaagatgcgttcaacgagacgttcggc
tcgacctgccatggggctgggcgggtgctgtcacgccacgccgccaggaaactggcccgc
agacgcgacatcccggccgatctggctgcaaaggggatcctgatccgcgcggccgggcgc
gccaccatggcggaggaaatctccgaggcgtacaaggatgtctcggaggtggtggaagtg
gtgcgtcgcgccgggatcggccgcattgtggcgcggctggtgccgatggcggtggtgaag
gggtga
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