Halotalea alkalilenta: A5892_11140
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Entry
A5892_11140 CDS
T04333
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
haa
Halotalea alkalilenta
Pathway
haa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A5892_11140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haa03019
]
A5892_11140
03009 Ribosome biogenesis [BR:
haa03009
]
A5892_11140
Enzymes [BR:
haa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A5892_11140
Messenger RNA biogenesis [BR:
haa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A5892_11140
Ribosome biogenesis [BR:
haa03009
]
Prokaryotic type
rRNA processing factors
A5892_11140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ANF57948
UniProt:
A0A172YFA3
LinkDB
All DBs
Position
complement(2501065..2504406)
Genome browser
AA seq
1113 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRARITRVEPSLEAAFVDF
GAERHGFLPLKEVAREYFVKDPSSGGRPNIREVLKEGQEIIVQVDKEERGNKGAALTTFI
SLAGRFLVLMPNNPRAGGISRRIEGDERSQLKEAMNDLRLPDKMGVIVRTAGIGRSSEEL
QWDLDYLVQVWEAITEEANQRSAPFLIYRESNVIIRAMRDYLRQDIGEVLIDGESVYAEA
LGFVQQVMPSYQQKIKLYQDEVPLFSRFQIESQIETAYQREVKLPSGGAIVIDNTEALVS
IDINSARATRGGDIEETALQTNLEAADEIARQLRLRDSGGLVVIDFIDMSPAKNQREVEN
RMRDALKLDRARVQVGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSL
SILRLIEEEAMKDRSAQIRAVLPVPVATYLLNEKRHVLAEIERRQGVRVMLLPEPDMDTP
HYDVQRLRDDQIEEEELGKSSFELDTHYEAPVVESGIGKVAARTEAAVKTVSHTTPAPSS
LIEEPVLAEPAPTAPAAQAAPAAPATSEGGFITRLVRSMGRILGGEAATSDAERDAGAKQ
QSAATSKRAPGNATRGNGQGNGSRRDTNGGQGAREQAREPTEQRVKEERDGGRQRRPRRD
ERGEDARGKTPEGARQESRRPRDTDKVVEPSAREKPTVGRDTQPVKESAPPRDQERQSGR
AEARKQPVQPDAPVEQDTANQPKRTRNNPRKRTRTRALNPDAIAEQQHLQAAAAKDGADE
TTVAPVAQTPEPQDGAEQPQSSDAQPQERPRNPRGSQRRQEREVQGGNRTFGRDSAPAPG
ESTATDERQAATKPASGSAILANAAAAEGGIAYPAVPVSEPAASAEVKDVESKAPARSSH
DQNDQNDQNEAQLATPASPRGSGPSIVEPSRQLPDSATAAPTDEASEPVGKVGMPGQESD
QPSMAPGAKEKAGDVKTEGMHEAKPEAPAKASEAKHEVEPEVEVKAGAAEAKHEAKPKVQ
VKASAAEAKHEAPAKASDAKHEAKPAAQAKASEDKVAERSEAKPDAAVKADATAPAADAA
AETAEQANQRRSRRRAHNDPREQRRQQQEKHDH
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcatcaatgcgacgcagcccgaggagcttcgcgtcgctctggtggat
ggacaacgcctttacgacctcgacatcgaatcaggtgctcgtgaacagaagaaggccaac
atctatcgcgccaggatcactcgggtagaaccgagcctcgaggccgccttcgtcgatttc
ggcgccgaacgccacggcttcctgccgctcaaggaagtcgcccgcgaatacttcgtcaag
gacccctcctccggcggtcgccccaacatccgcgaagtgctcaaggaaggccaggagatc
atcgtccaggtcgacaaggaagagcgcggcaacaaaggtgcggcgctgaccaccttcatc
agcctggccggccggttcctcgtactgatgcccaacaacccccgtgccggaggtatttcc
cgacgcatcgagggtgatgagcgcagccagttgaaagaggcgatgaacgacctgcgcctg
cccgacaagatgggcgtgatcgtgcgtaccgctggcatcgggcgatcgagcgaggagctg
cagtgggacctcgactacctggtccaggtctgggaagcgatcaccgaggaggccaaccag
cgctccgcccccttcctgatctaccgcgagtccaacgtcatcatccgcgcgatgcgtgac
tacctgcgccaggatatcggcgaagtgctgatcgatggagaaagcgtctatgccgaggcg
cttggcttcgtccagcaggtgatgccgagctaccagcagaagatcaagctctaccaggat
gaagtgccgctgttctctcgcttccagatcgagtcgcagatcgagaccgcctaccagcgc
gaggtgaagctcccctccggcggcgcgatcgtgatcgacaacaccgaagcgctggtgtcg
atcgacatcaactccgcgcgtgccactcgcggcggcgatatcgaggaaaccgcgctgcaa
accaacctcgaggccgccgacgagatcgcacgccagctgcgcctgcgcgactccggcgga
ctggtggtgatcgatttcatcgacatgtcgccggcgaagaaccagcgcgaagtcgagaac
cgcatgcgcgacgcgctcaagctcgaccgtgctcgagtgcaggtcgggcgtatctcgcgc
ttcggtctgatggagatgtcgcgccagcgcctgcgcccctcgctcggcgagaccagcggc
gtggtctgcccgcgctgcaatggccaaggcaccatccgcgacgtccgctcgctgtcgctg
tcgatcctgcgcctgatcgaagaagaggcgatgaaggatcgcagcgcccagattcgcgcg
gtgctgccggtaccggtcgcgacctacctgctcaacgaaaagcgccacgtcctcgccgaa
atcgagcggcgccagggcgtgcgggtgatgctcctgcccgagcccgacatggacaccccg
cactacgatgtgcagcgcctgcgtgacgaccagatcgaggaagaggagctcggcaagtcg
agcttcgagctggatacccactacgaggcaccggtggtcgaaagcggtatcggcaaggta
gccgcgcgcaccgaggccgcggtcaagaccgtaagccacaccaccccggcgccttcgtcg
ctgatcgaggagcccgtcctggcggagccagccccgaccgcgccggcagcgcaggcagcg
ccagccgcgccggctaccagcgaaggcggcttcatcacccgtctggtacgcagcatgggg
cgcatcctgggcggcgaagctgcgaccagcgatgccgagcgtgacgccggtgccaagcag
caaagcgccgccacttccaagcgggcgccgggcaacgctacccgtggcaacggccagggc
aacggctcgcgccgcgacaccaacggtggccaaggcgcgcgcgaacaggcccgggagccg
accgagcagcgggtgaaggaagagcgcgacggcggccgccagcgtcgcccgcgccgcgat
gagcgtggcgaagacgcacgcggcaagaccccggagggcgcccgccaagagtcacgccgc
ccgcgtgacaccgacaaggtggtcgagccgagcgcgcgcgaaaaaccgaccgttggacgc
gatacccagccggtgaaagagagcgcgcccccgcgcgatcaggagcgccagagcggccgc
gctgaagctcgcaagcagcccgtccagcccgatgcgcctgtcgagcaggacactgccaac
cagcccaagcgcacgcgcaacaacccgcgcaagcgtacccgcacccgtgcgctcaatccc
gatgcgatcgccgagcagcagcacctgcaggccgcggcagcgaaggatggtgcagacgag
acgacagtcgcgccggtcgcacaaacgcccgaaccccaggacggcgcggagcaaccccaa
agcagcgacgcgcaaccacaggagcggcctcgtaacccgcgcggctcgcagcgccgccag
gagcgcgaagtccaaggcggcaaccgcactttcggtcgcgacagcgcgccggcaccgggc
gaaagcaccgcgaccgacgagcgccaggccgcaacgaagccggcctccggcagcgcgatc
ctcgccaacgcggccgcagcggaaggtggaatcgcctatcctgcggtcccggtgagcgag
ccagcggcgagcgccgaggtcaaggacgtggagagcaaagcacccgcacgctcgtcgcac
gaccagaacgaccagaacgaccagaacgaggcgcagctggccactcctgccagtcctcgt
ggcagcggtccttcaatcgtcgagccctcgcgtcagcttcccgactccgccaccgcggcg
ccaaccgatgaagccagcgaacccgtcggcaaggtcggcatgccgggccaggaatcggac
cagccgagcatggcgcccggggccaaggaaaaagccggcgacgtgaagacagaaggcatg
catgaggcgaagcccgaggctccggccaaggccagcgaagccaagcacgaggtggagccc
gaggttgaggtcaaagccggcgcggccgaagccaagcatgaggccaagcccaaggttcag
gtcaaagccagcgcggccgaagccaagcatgaggctccggccaaggccagcgacgccaag
catgaggccaagcccgcggctcaggccaaagccagtgaagacaaggtcgcagagcgaagc
gaagcgaagcccgacgctgcggtcaaagccgatgccaccgccccggcggccgacgctgcg
gccgaaaccgccgaacaggccaaccagcgccgctcgcgccgccgtgctcacaatgacccg
cgtgaacagcgtcgtcagcagcaggagaagcacgaccactga
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