Hymenobacter nivis: DDQ68_07860
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Entry
DDQ68_07860 CDS
T05498
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hnv
Hymenobacter nivis
Brite
KEGG Orthology (KO) [BR:
hnv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hnv03016
]
DDQ68_07860
Enzymes [BR:
hnv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DDQ68_07860
Transfer RNA biogenesis [BR:
hnv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DDQ68_07860
Prokaryotic type
tRNA splicing ligases
DDQ68_07860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AWM32705
UniProt:
A0A2Z3GP20
LinkDB
All DBs
Position
complement(1802157..1803557)
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AA seq
466 aa
AA seq
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MASQLRGNDLRQLGFPEGRAIGLALAQLQRKEHKRLTQAEQLALLGRVLANPTTFLADLA
WSHTAAALLPAPSRHIALAERKPYATFGADYIEAGAIHQMETAMKLPVTLAGALMPDAHY
GYGLPIGGVLATDNAVIPYAVGVDISCRMALSVFDLPAKFLAQRTQEVGKLLLDNTRFGS
GRAWERGQRLDHAVLADDAFRAVPFLKNKLDKAAEQLGTSGSGNHFVEFGLVDITDPAND
LGLPVGQYVGLLSHSGSRGLGASTANHYTALAMEQCMLPAEAKHLAWLGLDTETGQEYWA
AMNLAGDYASACHNQIYRCLAKALVDKPLAKVENHHNFAWRETLADGRAAVVHRKGATPA
GAGVLGIIPGSMTAPGFIVRGRGAAASLASASHGAGRLMSRTRAKAELGEAEVRQHLAAY
GVTLHGGGLDEAPMAYKNIHQVMASQLDLVDVLGSFTPKIVRMDGA
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcaactacgcggcaatgatttgcggcagctcgggtttcccgagggccgggcc
attggcctggcgctggcgcagctccaacgcaaagaacacaagcgcctcacccaagccgag
cagctcgcgctgcttggccgggtactggccaatcccaccactttcctggccgacctggcc
tggagccacaccgccgcggcgctgctgccggctccctcgcgccacattgccctggccgag
cgcaagccctacgccacgttcggggccgactacatcgaggccggcgccattcaccagatg
gaaacggccatgaagctgcccgtcaccctcgccggggccctcatgcccgacgcccactac
ggctacggcctgcccatcggcggcgtgctggctacggacaacgccgtgattccctacgcc
gtgggcgtggacattagctgccggatggcgctgtcggtgttcgacctgccggccaaattt
ctcgcccagcgcacgcaggaggtaggcaagcttttgctggataatacccggttcggctcg
ggccgggcctgggagcggggccagcgcctcgaccacgccgtgctcgctgacgacgccttc
cgggccgtgccgttcctgaaaaacaagcttgataaagccgccgaacagctcggcacctcg
ggctcgggcaaccacttcgtggagttcggcctggtcgacatcaccgacccggccaacgac
cttggcctgcccgtgggccagtacgtgggcctgctctcgcactccggctcgcggggcctg
ggcgctagcaccgccaaccactatacggccctggcgatggagcagtgcatgttgcccgcc
gaagccaagcacctcgcctggctgggcctcgacaccgaaaccggccaggaatactgggcc
gccatgaacctggccggggactacgcctcggcctgccacaaccagatttaccggtgccta
gccaaagctctggttgataagccgttggcgaaagtggaaaaccaccacaacttcgcctgg
cgtgaaaccctggccgacggccgcgccgccgtggtgcaccgcaagggcgccacgccggcc
ggggcgggcgtgctcggcatcatccccggctcgatgacggcccccggcttcatcgtgcgg
gggcggggcgcggcggcctcgctggcctccgcctcgcacggggccggccggctcatgtcg
cgcacccgcgccaaggccgagctaggcgaagccgaagtgcgccagcacctggccgcctac
ggcgtaaccctgcacggcggcggcctcgacgaagccccgatggcctacaaaaacatccac
caagtaatggccagccaactcgacctagtggacgtgctcggctcgttcacgcccaaaatc
gtgcggatggacggggcataa
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