Hafnia paralvei: AL518_13100
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Entry
AL518_13100 CDS
T05667
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hpar
Hafnia paralvei
Pathway
hpar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL518_13100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpar03019
]
AL518_13100
03009 Ribosome biogenesis [BR:
hpar03009
]
AL518_13100
Enzymes [BR:
hpar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AL518_13100
Messenger RNA biogenesis [BR:
hpar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AL518_13100
Ribosome biogenesis [BR:
hpar03009
]
Prokaryotic type
rRNA processing factors
AL518_13100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
AMH18863
LinkDB
All DBs
Position
complement(2961000..2964383)
Genome browser
AA seq
1127 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLS
LSILRLIEEEALKENTNEVHAIVPVPVASYLLNEKRESVSAIEKRQDGVKVIVVPNDQMQ
TPHYSVVRVRKGEETSTLSYLLPQLHEAESLTAEEEPVLERKRPEQPALAPFSLDVEAPP
AETAAPATVAPATKAVAKPAEPTQPGLVSRFFSALKNMFAGSESEQKPAAEPAAPVEEPR
RQNQDRRNNNRRQNGRRDRNDHNDRNNDRNSDRPERSNDRNNDRSNRNERNSNREDQRRN
RRQPAQAVNTDVNVDAAPTEQRDEQQPRREPRNNDRQRRRTEDKRQAQQEVKALENNDVV
AATEAEESNREENQHMPRRQRRQLTQKVRFTTQAEDDAAALAKASVPAVVVTPTVAEAAP
TVQADAPQQQASEEESFRDNRQGENGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMP
LAFAAASPEMASGKVWISYPVAPTATTEVEAHASTTEQHQTETHVSPVAENVVEHRVEQP
AVVETVVAAPVVKPVIIPAVVTSVVATSVAAAPAASLTTDTVAAEPVTEVKPAEPSIDAV
EVASNAPVVEETAAEETVVEQSVTEETAEAVAPVVAETPAESVSEELATAESTAIDAAEV
PVLAETQPETPATETVETRATEDAVVEAPVQPAVATPAKPVIVVAAKAQRVATAPMTKAP
APEYVPSTPAVSTWQRPALDLQSKGGAGGHAAVSQATAPATKPPAVD
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgccctagtagac
ggacagcgtctgtacgatctggatattgaaagcccaggccacgaacagaaaaaagcgaat
atctacaagggaaaaataacccgtattgagccaagtctggaagctgcttttgtagattac
ggtgctgaacgacatggttttctccccctcaaagaaatcgcccgcgaatatttccctagc
aactactcctctcatggccgcccaaacatcaaagatgttttgcgcgaaggtcaggaagtt
attgttcaggttgataaagaagaacgtggaaacaaaggcgcagcgctaacaacgtttatc
agcctagctggtagctacttggtattgatgccgaacaacccgcgtgcaggtggtatctct
cgtcgtatcgagggtgatgaccgtacagaattgaaagaggccctttcttctctgcagttg
cctgatggaatgggtctaattgttcgtaccgcaggcgtgggtaaatctgccgaagctctg
caatgggatctgtcattccgcctgaaacactgggatgccattaaaaaagccgctgaaggc
cgccctgctccattcctaatccatcaagaaagcaacgttatcgttcgcgcattccgtgat
tacctgcgccctgatatcggcgaaatcctgattgataacccaaaaattctcgatctcgcc
aaacagcatattgctgcgttggggcgtcctgatttcagcagcaagattaaactgtatacc
ggtgaaatcccgctgtttagccactaccagatcgaatcccagattgagtctgcattccag
cgtgaagtacgcctaccttccggcggctccatcgttattgactcgactgaagccttgacc
gctatcgatatcaactccgctcgtgcaactcgcggcggtgatatcgaagaaacggcgttc
aatactaacctcgaagcggctgatgaaattgctcgccagctgcgactgcgtgaccttggc
ggcctgatcgtgatcgattttatcgatatgacaccggtacgccatcagcgcgaagttgaa
aaccgtctacgcgacgccgtccgtcaggatcgcgctcgtattcagattggccgtatttca
cgcttcggtttgctggaaatgtctcgtcaacgtctgagcccgtctcttggcgagtccagc
caccacgtgtgtccgcgctgtaacggtacaggcaccgtacgtgacaatgagtctctgtct
ctctcgattctgcgcctgattgaagaagaagcgctgaaggaaaacaccaacgaagtccac
gcgattgttcctgttccggttgcttcatacctgctgaacgaaaagcgtgaatccgtgagt
gctatcgagaagcgtcaggatggtgtgaaagtcatcgtcgttcctaacgatcagatgcaa
acaccacattattccgtcgtacgcgtgcgtaaaggtgaagaaaccagcaccctcagctat
ctcttgcctcaactccatgaagcagagagcctgactgctgaagaagaaccggtacttgag
cgtaaacgtcctgaacaacccgcactagcgccgttctctctggatgttgaggctccgccg
gctgaaactgccgcacctgctaccgtagcacctgcgacgaaagcagttgctaagcctgct
gaaccaacccaaccaggtttggttagccgcttcttctctgcactgaaaaatatgtttgct
ggttcagagtcagagcaaaaaccagctgccgaacccgctgcgccggtggaagaacctcgc
cgccagaatcaggatcgtcgcaacaacaaccgccgtcaaaatggacgtcgcgatcgtaat
gaccacaacgatcgtaataacgaccgcaatagcgaccgccctgaacgcagcaacgaccgt
aataacgatcgtagcaatcgcaacgaacgtaacagcaaccgtgaagaccagcgccgtaat
cgccgccagccagcacaagctgtcaataccgacgttaacgttgatgcagcgccaactgaa
cagcgcgatgaacagcagccacgtcgtgaaccacgtaacaacgaccgtcagcgtcgacgt
accgaggataaacgtcaggctcagcaagaagtaaaagcgctagaaaacaatgacgtcgtc
gccgcgaccgaagccgaagaaagcaaccgtgaagagaatcagcacatgccgcgccgtcag
cgccgccagctgactcaaaaagtacgcttcacaacgcaggctgaagacgatgccgcagcg
ttagctaaagcctccgttcctgccgtagtcgtcacgccgacggtagctgaagctgcgccg
actgttcaggctgatgcaccacagcagcaggcaagcgaagaagaaagcttccgtgataac
cgtcagggtgaaaacggtatgcctcgtcgttctcgccgctcacctcgtcatctgcgtgtt
agcggtcagcgccgtcgtcgttatcgtgatgagcgttacccaactcagtcgccaatgcct
ctggcatttgccgccgcctctccagagatggcatctggcaaagtgtggatcagctatcca
gttgcaccaacggcaacgactgaagttgaagcgcatgcttctacaaccgaacaacaccag
accgaaacacatgtttctcctgttgctgaaaacgttgtggaacacagagtagaacaaccc
gcagtggttgaaaccgttgtggcggcacccgtcgttaagccagtcatcatccctgcggtg
gtcacttctgtagtagcaacctcagttgctgcagcaccggctgcatcgttaaccacggat
accgttgcggcagagcctgtgactgaagttaaacctgcagaaccgagcatcgacgcggta
gaagttgcttctaacgcccctgttgttgaagaaacagcagccgaagagacagtggtcgag
cagagtgttactgaagaaaccgcggaggctgttgctcccgtagtggcagaaactcctgct
gaatcagtgagcgaagagctagcgactgctgaatccacggcaatcgatgctgctgaagtt
cctgttctagcagagactcagccagaaacgccagcgactgaaacagtagagactagggct
actgaagacgctgtcgtcgaggcgcctgtacagcctgcggtggcgactccagctaaaccg
gttattgtggttgcggctaaagcacagcgcgtagcaacagcaccaatgactaaggctccc
gcacctgagtatgttccttcgactccggccgtgagcacttggcagcgccctgctttggat
ctacaaagcaaaggcggtgccggtggacatgcagcggtaagtcaggcaacagcaccggca
actaagccaccagccgttgattga
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