Idiomarina sp. OT37-5b: C5610_06485
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Entry
C5610_06485 CDS
T05379
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
idt
Idiomarina sp. OT37-5b
Pathway
idt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
idt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5610_06485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
idt03019
]
C5610_06485
03009 Ribosome biogenesis [BR:
idt03009
]
C5610_06485
Enzymes [BR:
idt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C5610_06485
Messenger RNA biogenesis [BR:
idt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C5610_06485
Ribosome biogenesis [BR:
idt03009
]
Prokaryotic type
rRNA processing factors
C5610_06485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AVJ55988
UniProt:
A0A2S0IKE8
LinkDB
All DBs
Position
1390251..1393244
Genome browser
AA seq
997 aa
AA seq
DB search
MKRMLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAKTYFPEGYTFQGRPNIKDVVKEGQEVIVQIDKEERGQKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERSALKEALSDLNVPKEMGLIVRTAGVGKSKEEL
EWDLNVLLHHWEAISKAANERPAPFLIHQESNVIFRALRDYLRRDIGEVLIDSKKVFEQV
RNHIQLIRPDFLNRVKLYEGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPARHQREVEN
RLRDSLAHDRARIQVARISRFGLLEMSRQRLRPSLGESANGVCPRCNGQGTIRSSESLAL
SILRLIEEEAIKDNTVQVQAQVPVSVATYLLNEKRSAVNKIEERHDVKAVIIPNHHLETP
HFEVIRIRDDEVPEAASFQLVSKPEQDQSVAITLTKDRQQIEEPALKGLQAPTAPPPAAP
AAAPAAAAAAPAAAPSLIQRLGNWLAGLFGSSEETDKESKQEQNNKQQQRGNQRRGGRNQ
RGGNRRSRQRPRNDDNRNKAAQSDAEDNTAADNKRQDERQDNRSGNGRRNNRRGRGRGRN
QNQSQAQGQPNNRKAEQDQQTAPVPAPEQQATEKAPKPDADQQPRTPKKRRPQKKLERSV
RVTDKTTASQPEVQPEAKQEPQQQAGQKQPEAAKQQPSSAPEKSATGEREPRQPSPKVLA
SKVNDPRLQAAAELVEAEQHTAAAPADEQPVADVNKAEPVNAEKPETQQQEQQPQQPQEA
DSEAAETPVASEPSTEAAEPVNDAQQSQAADAEAQTPSAPVEQEPAAASEDEKPAKSERN
RSRRSPRHQRAAGQKRKRDKEAANAIAVQPVYPSRVKSKAFADMTKASATLREGEFSPFP
VAAATARSEFVKSDKTAAIEQSTSRAQADMAKCSPSS
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgccacgcaactggaagagttgcgtgtcgcactggtcgac
ggccagcgcttatacgacctggatattgaaagtcctggccacgaacaaaagaaagcgaac
atttataagggtaaaatcacacggattgaacccagcctagaagccgctttcgttgactat
ggtgcagagcgccacggattcctcccccttaaagaaattgccaaaacttacttcccagaa
ggttatacgttccaaggccgcccgaacatcaaggacgtggttaaggaaggccaggaagtt
atcgtacaaattgataaagaagaacgcggtcaaaaaggcgctgcgttaaccacctttatc
tcattggcgggcagctacctggtactgatgccaaacaacccgcgtgccggtggcatttct
cgtcgcatcgaaggtgatgagcgctcggccttaaaagaggcactcagcgaccttaacgtt
cccaaggaaatgggtctgatcgtacgtaccgccggcgttggtaagtctaaagaagagttg
gagtgggatcttaatgttctgctgcatcattgggaagccatcagtaaagcggccaacgaa
cgccctgctccgttcctgatccatcaggaaagcaacgttattttccgggcgttacgtgat
tacttacgccgtgatatcggtgaagtactgatcgacagcaaaaaagtgttcgaacaggtt
cgcaaccacattcagttgatccgcccggacttccttaaccgcgtcaagctgtacgaaggc
gatgtgccgctgttcagtcattatcagattgaaagccaaattgaatcggcattccagcgc
gaagtgcgactgccgtccggtggttccatcgtcattgacccgactgaagcactgacgtca
atcgatattaactcatcgcgcgccaccaaaggcggcgatatcgaagaaacggccctgcaa
accaaccttgaagccgcggaagaaattgcccgtcagttacgtttacgtgacctcggtggt
ctggtggtcatcgactttatcgacatgactccggctcgtcaccagcgtgaagtggaaaac
cgtctgcgcgacagcctggcacatgatcgcgctcgcattcaggtggcgcgcatttctcgc
ttcggcttgttggaaatgtcccggcagcgcctgcgtccatcgttgggtgaatcagctaac
ggcgtttgccctcgttgtaatggacaaggcaccattcgttccagtgaatcgttggcattg
tccattttgcgtttgatcgaagaagaagcgatcaaggacaacacggtacaggtacaggct
caggtgccggtatccgttgccacctatttgctgaacgaaaagcgctcggccgttaataaa
atcgaagaacgccatgacgttaaagcggtgatcattccgaatcaccacttagaaacacca
cacttcgaagttatccgtattcgcgacgacgaagtgccggaagcggccagtttccagttg
gtttctaaacctgaacaagatcagtctgtggcgattacgctgactaaggatcgccaacaa
attgaagagccggcgttaaaaggcttgcaagcacctacggcaccacctccggcagcgcct
gctgctgcaccggctgcggctgcggcggcacctgcagccgcgccttcgttaattcaacga
ctgggtaactggttggccggtttgttcggcagttcggaagaaacggataaagaaagcaag
caggaacagaataacaagcagcagcaacgcggtaaccagcgtcgcggcggacgtaatcaa
cggggcggaaaccgtcgttcacggcagcgcccacgcaacgacgataaccgcaacaaagcg
gcgcagagcgatgcggaggacaacactgcagcggacaataaacgtcaggacgaacgtcag
gacaaccgttccggtaatggccgccgtaataatcgtcggggtcgtggccgtggtcgtaat
caaaatcagtctcaagcacaaggccagccaaacaaccgtaaagctgaacaagatcagcaa
actgctcctgttccggctccggaacaacaggctaccgagaaagcaccgaagccagacgct
gatcagcagccgcggacgccgaaaaagcgccgcccgcagaagaaacttgaacgttctgta
cgggtaactgataaaacgacggcgtcacaacctgaagtgcaaccagaggctaagcaggaa
ccgcagcaacaggctgggcaaaagcagccggaagccgctaagcaacagccttcttccgca
cctgaaaagtcggcaacgggtgagcgtgaaccacgtcagccttcgcctaaagtactggct
tcaaaagtgaatgatcctcgtcttcaggccgccgccgaactggttgaagcagagcaacat
acagctgctgccccggccgacgaacagccggtagctgatgtgaacaaagcagaacctgtt
aacgccgagaaaccagaaacgcagcaacaggaacagcaaccgcaacagccgcaagaagcg
gattcggaagctgcggaaacgccggtagcctctgagccgagcactgaagctgctgagccg
gttaacgacgcacagcaatctcaagcggccgacgcagaagcacaaacgccttcggctccg
gtcgagcaagagcctgccgcagcgagcgaagacgagaagccggcgaagtcggagcgtaac
cgttcacgccgctcacctcgccatcaacgcgcagccggacaaaagcgtaagcgcgataaa
gaagcggcaaatgcgattgccgtgcagccggtttatccaagccgggtgaaaagtaaagca
tttgcggacatgaccaaagccagcgctacgctgcgtgaaggtgaattctcgccgttcccg
gtggctgcagcgaccgcgcgctcggaatttgttaagtccgacaagaccgcagcaattgag
cagtcgacctcgcgggcgcaggctgacatggcgaaatgttctccgtcatcctga
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