Ictalurus furcatus (blue catfish): 128618027
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Entry
128618027 CDS
T09387
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ifu03016
]
128618027 (rtcb)
Enzymes [BR:
ifu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
128618027 (rtcb)
Transfer RNA biogenesis [BR:
ifu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128618027 (rtcb)
Prokaryotic type
tRNA splicing ligases
128618027 (rtcb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
128618027
NCBI-ProteinID:
XP_053497345
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All DBs
Position
14:4230792..4237189
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKIDKTCWRIKKGFVPNMKVEGVFYVNESLEKLMFEELRNACRGGGLG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPTAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMNAKDLEEALEMGMDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDNIVVNDRQLACACIGS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctcttataacgacgaattgcagtttttggataagatcgacaagacatgttgg
cgaatcaagaaggggttcgtcccaaacatgaaggtggagggtgtcttctatgtcaacgag
tcgctggagaagctgatgttcgaagagctgcgaaacgcatgtcgtggaggaggtcttggc
ggatttctgcccgctatgaagcagatcgggaatgtggcggctctgccgggaatcgtgcat
agatctataggcctgcctgacgttcactccggatacggttttgcgatcgggaacatggct
gctttcgacatgagcgacccgacggcggttgtctcaccaggtggtgtagggtttgacatt
aattgtggtgtgcgcctgctgagaaccaacctggatgaaggagacgtgcagccggtgaag
gaacagctggcccaggctctctttgaccacatccctgtaggagtcgggtccaagggagtc
attcccatgaatgccaaagatttggaggaggccctggagatggggatggactggtctctg
cgcgagggctacgcctgggctgaagataaagagcactgcgaagagtacggcagaatgctg
caggccgacccgaacaaggtttcctccaaggccaaaaagagaggactgccgcagcttggg
acgctgggagcagggaatcactacgccgagatccaggtggtggacgagatctacaatgac
tacgcagccaaaaagatgggcatcgaccacaagggtcaggtgtgcgtgatgatccacagc
gggagtcgtgggctgggacatcaggtggccacagatgctttggtggccatggagaaggcg
atgaagcgtgacaacatcgtggtaaacgatcggcaactcgcttgtgcctgcatcggttct
cctgaaggtcaggactacctgaagggcatggcggctgcaggcaactacgcctgggtcaac
cgctcctccatgaccttccttacacgtcaggccttctccaaagtgtttaacaccacacct
gatgatctggatatgcatgtgatctatgacgtgtcccataacattgctaaagtggaggag
cacatggtggacggcaagcagaaaaccctgctggtgcatcgtaagggctcaacacgggct
ttcccccctcatcaccctctcatcgcagtcgactaccagctgactggtcagcctgtgttg
attggtggcacaatgggcacctgcagctacgtgttgactggcactgagaagggcatgact
gaaacttttggcaccacctgccatggcgcaggtcgggcactgtcccgagctaaatcccgc
aggaatctggactttcaggacgttttggacaaactggctgatatgggcatcgccatcaga
gtggcttcaccaaaactggtcatggaggaggccccagaatcctacaagaatgtaacagat
gtggtgaacacgtgccatgacgccggcatcagcaagaaggccatcaagcttcgacccatc
gctgtgattaagggttaa
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