Janibacter limosus: EXU32_09255
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Entry
EXU32_09255 CDS
T05853
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
jli
Janibacter limosus
Pathway
jli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXU32_09255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jli03019
]
EXU32_09255
03009 Ribosome biogenesis [BR:
jli03009
]
EXU32_09255
Enzymes [BR:
jli01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EXU32_09255
Messenger RNA biogenesis [BR:
jli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EXU32_09255
Ribosome biogenesis [BR:
jli03009
]
Prokaryotic type
rRNA processing factors
EXU32_09255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Rep_1
Motif
Other DBs
NCBI-ProteinID:
QBF46421
UniProt:
A0A4P6MRW1
LinkDB
All DBs
Position
complement(1932077..1935088)
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AA seq
1003 aa
AA seq
DB search
MATDNDNQRDESFEEDVTTAEDETTQQPAPVAAVPSFGLLFQPPTTVAAPPRRRAPEPEP
ADEDSYEDDVDTRDERGSDRNDRDDRNDRDDRNDRDDRNDRDDRSERDESNDSSDSSESS
DDDNTQGEGGRRRRRRGGRGRNSNNRSTDSSDDGSAASGDASSSDTTSSDASSSDSDSSS
DDTSSDTSDDDSSDEGSGNGNNGGGSSRNRGRGRGRGRGNKQQDEPTDDSDADDTSAEDD
SDDSDDSDDDGGSSSRRRRRRRRGGSGGGNNNGGSRQEDPPGTTTRVRESRRDEVQSIKG
STRLEAKKQRRREGREQGRRRTIITEAEFLARRESVERVMVVRQQGERTQIAVLEDGVLA
EHYVSRETTSTLVGNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEVNWEAQGVGNGQA
RRIENAMSAGDSVLVQVTKDPVGHKGARLTSQISLPGRYVVYVPEGSMTGISRKLPDTER
SRLKAILKQVVPDSAGVIVRTAAEGASEKELTADVERLTKAWDKVSEAAETKKVKKGSSG
GAPVLLHAEPDMTVRVIRDIFNEDFASMVVSGESAWREIKGYVDAVAPDLSDRLEQWTGE
GDVFGAHRVDEGISKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFIGSGGNLEETVTK
NNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLEANRDLVVRRLLECLGRDRTKHQVAEVTS
LGLVQMTRKRVGAGLIEVFSEECEHCQGRGIIVHSEPVHHDPGGHAGGNHGGSGGGNGNG
GGRSRRGRSKGESDSSQQRQEPVEETTDANGRTAAQIAAAAHAAAIKNISGEPGEDDVAE
LEVPALDQPVVEEPAPEEATAPEPEAPKRRRGGRRAASSAGAPVALEPVDLTPATEPEPE
VAPEPVEAATPEPEPALETEPEPEPEAPKRRRGGRRAASSAGAPVALTPVDLTAPVETPA
APITKVAGESGEAPTTPVADPEPAAPARPKRKRVTSQAGPPQA
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgacaacgacaaccagcgtgacgagtccttcgaagaggacgtcaccaccgcc
gaggacgagaccacccagcagccggctccggtcgcggccgtgccgtccttcggactgctc
ttccagccgccgacgaccgtcgccgcgccgccgcgccgccgagccccagagccggagcct
gcggacgaggactcctacgaggacgacgtcgacacgcgcgacgagcgtggcagcgaccgc
aatgatcgcgacgaccgcaatgatcgcgacgaccgcaatgatcgcgacgaccgcaacgat
cgcgacgaccgcagcgagcgcgacgagagcaacgactccagcgactccagcgagtccagc
gacgacgacaacacccagggcgaagggggccgccgtcgccgtcgtcgtggtggccggggc
cgcaacagcaacaaccgctcgacggactcctccgatgacggctccgccgcgtccggcgac
gcctcctcgagtgacaccacctcgagcgacgcctcctcgagtgacagcgactcctcgagc
gatgacacctcgtccgacacctcggacgacgactcctccgacgagggctcgggcaacggc
aacaacggcggcggcagcagccgcaaccggggtcgtggccgcggtcggggtcggggcaac
aagcagcaggacgagcccaccgacgactccgacgccgacgacacctccgccgaggacgac
tccgacgacagcgacgactccgacgacgacggcggctcgagctcgcgtcgtcgccggcgt
cgtcggcgtggtggcagcggtggcggcaacaacaacggcggcagccggcaggaggacccg
cccggcaccacgacccgcgtgcgcgagtcgcgccgcgacgaggtgcagtcgatcaagggc
agcacccgcctcgaggccaagaagcagcgtcgccgcgagggccgagagcagggtcgtcgc
cgcacgatcatcaccgaggccgagttcctcgcccgccgcgagagcgtcgagcgcgtcatg
gtcgtgcgccagcagggcgagcgcacccagatcgcggtcctcgaggacggcgtgctcgcc
gagcactatgtctcccgtgagacgacgtcgaccctggtcggcaatgtctacctcggtcgg
gtgcaaaacgtgctgccgagcatggaggccgccttcatcgacatcggcaagggccgcaac
gccgtgctctacgccggtgaggtcaactgggaggcgcagggcgtcggcaacggccaggcc
cgtcgcatcgagaacgccatgtcggccggcgactcggtcctcgtccaggtcaccaaggac
ccggtcggtcacaagggtgcgcgcctgacctcgcagatctccctgccgggccgctacgtg
gtctacgtgcccgagggcagcatgaccggtatctcccgaaagctcccggacaccgagcgc
tcgcggctgaaggcgatcctcaagcaggtcgtccccgacagcgccggtgtcatcgtgcgc
accgctgcggagggcgcctccgagaaggagctgaccgccgacgtcgagcggctcaccaag
gcctgggacaaggtcagcgaggcggccgagaccaagaaggtcaagaagggctcctccggc
ggtgcgcccgtgctgctgcacgccgagcccgacatgaccgtccgggtcatccgcgacatc
ttcaacgaggacttcgcctcgatggtcgtctcgggcgagagcgcctggcgcgagatcaag
ggctatgtcgacgccgtggccccggacctgtccgacaggctcgagcagtggaccggtgag
ggtgacgtcttcggcgcgcaccgggtcgacgaggggatctccaaggcgatggaccgcaag
gtctggctgccctcgggtggctcgctcgtcatcgaccgcaccgaggcgatgaccgtcgtc
gacgtcaacaccggcaagttcatcggctccgggggcaacctcgaggagacggtcaccaag
aacaacctcgaggcggccgaggagatcgtgcgtcagctgcggctgcgcgacatcggcggc
atcatcgtcgtcgacttcatcgacatggtcttggaggccaaccgcgacctggtcgtgcgt
cgcctcctggagtgcctgggacgcgaccgcaccaagcaccaggtcgccgaggtgacctcg
ctcggcctggtccagatgacccgcaagcgggtcggggccggactcatcgaggtcttcagc
gaggagtgcgagcactgccagggccgcggcatcatcgtgcacagcgagcccgtccaccac
gacccgggcggtcacgcggggggcaaccacggcggtagtggcggcggcaacggcaacggc
ggcggcaggtcccgtcgtggccggtcgaagggagagtccgactcctcccagcagcgtcag
gagcccgtcgaggagaccaccgacgccaacggccgcaccgcggcccagatcgctgcggcg
gcccacgccgctgcgatcaagaacatctcgggggagcccggcgaggacgatgtcgccgag
ctcgaggtccccgcgctcgaccagcccgtggtcgaggagccggcgcccgaggaggcgacg
gcaccggagccggaggccccgaagcgtcgtcgtggtggccgtcgcgccgcctcgagcgcc
ggcgccccggtggccctggagccggtcgacctgaccccggccaccgagcccgagcccgag
gtggcaccggagccggtcgaggcagcaacgccggagccggagcccgcgctggagaccgag
ccggagccggagccggaggccccgaagcgtcgtcgtggtggccgtcgcgccgcctcgagc
gccggtgcgccggtcgcgctgacgccggtggatctcacggcccccgtcgagacgccggct
gccccgatcaccaaggtggcgggggagtcgggcgaggccccgaccaccccggtggccgac
cccgagccggctgctccggcccgtcccaagcgcaagcgggtgacgtcgcaggccggtccg
ccgcaggcctga
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