Kosakonia oryzendophytica: O9K67_15125
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Entry
O9K67_15125 CDS
T08786
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
koo
Kosakonia oryzendophytica
Pathway
koo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
koo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O9K67_15125 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koo03019
]
O9K67_15125 (rne)
03009 Ribosome biogenesis [BR:
koo03009
]
O9K67_15125 (rne)
Enzymes [BR:
koo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
O9K67_15125 (rne)
Messenger RNA biogenesis [BR:
koo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O9K67_15125 (rne)
Ribosome biogenesis [BR:
koo03009
]
Prokaryotic type
rRNA processing factors
O9K67_15125 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
WBT56512
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All DBs
Position
3122415..3125573
Genome browser
AA seq
1052 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPASYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHISALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTQEVHAIVPVQVASYLLNEKRAAVSAIEARQGGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYLLPKLHEEAMALPSEEDVPERKRPEQPALATFVMPDVPPV
PQAPAPTPAVTAQPASVVAQSSPGLLGRFFSALKGLFASEAAPASVEVKEEEKKNAGEKQ
DRQQDRRKSRQGNRRDRNERRDSRGEGNEAREGRDNREGREENRRNRREKSQQNAEARDV
RQPVAVEEADKAKPRDEQQPRRERNRRRNDEKRQAQQDVKELSRDEQTAPETEQEERVQT
MPRRKQRQLNQKVRVGEQNAETVVEKDAVQDVPAPRTELAKVELPVVADSANAQEQDENG
DTRENAMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSAMPLTVACASPEMASGKVWISYP
VARPQDEQQVQDSEVEQNVATEQDVAPAIAEAQLVASQPAEAPEASAPVETAETATAEPA
IAEPQTPVEAPEPVVVETTHPEVIESPVEDQPQLIAEEDRTVAEAVVENVQPAQPPVVAE
PVAETAVAEDVTEETATPVIEVPVIPAAAPPAARKIATAPMTKAPAPAYVPEAPRHSDWV
RPEFGFTGKGAAGGHSATHSATAPATKPPSVN
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgtgtcgcccttgttgat
gggcagcgcctgtacgacctggatatcgaaagcccgggtcacgagcagaaaaaagcgaac
atctacaaaggcaaaatcacccgcattgaaccgagcctcgaagctgcatttgttgattac
ggagctgaacgccacggttttctccctcttaaagaaatcgcccgcgaatacttccctgcc
agctacaacgcccatgggcgtccgaacatcaaagatgtgctgcgcgaaggtcaggaagtc
attgttcagatcgataaagaagagcgcggcaacaaaggcgcggcgcttaccacctttatc
agccttgctggcagctacctggtattgatgccaaataacccacgtgcgggcggtatctcc
cgtcgcatcgaaggcgacgaccgcaccgaactgaaagaagcgctgtccagtctggaactg
ccggatggcatgggtcttattgtccgtacagcaggcgtgggcaaatctgccgaagcactg
cagtgggatctgagcttccgtctgaaacattgggaagccatccagaaagccgcagaaagc
cgcccggcgccgttcctgatccaccaggaaagcaacgtgattgtgcgcgctttccgcgat
tacctgcgccaggacatcggcgaaatcctgatcgataacccgaaagtgcttgagctggcc
cgccagcatatctccgcgctgggtcgtccggatttcagtagcaaaatcaaactgtacacc
ggcgaaatcccgctgttcagccactaccagattgagtcgcagattgagtctgccttccag
cgtgaagtgcgcctgccttccggcggctctatcgttattgatacgaccgaagcactgacc
gctatcgacatcaactccgctcgcgcaacccgcggcggcgatatcgaagagacggcgttt
aatactaacctggaagcggcagacgaaattgcccgtcagttgcgcctgcgcgaccttggc
ggcctgattgttatcgacttcatcgacatgacgccagtacgtcaccagcgtgctgtggaa
aaccgtctgcgtgaagcggtgcgtcaggaccgtgcgcgtattcaaatcagccatatttcc
cgcttcggtctgctggaaatgtcccgccagcgtctgagcccgtcgcttggcgagtccagc
catcacgtttgcccacgctgtagcggcactggcaccattcgtgacaacgaatccttgtcg
ctgtctattctgcgcttgatcgaagaagaagcgctgaaagaaaacacgcaggaggtgcat
gccatcgttccggtgcaggtcgcttcttacctgttgaacgaaaaacgtgctgccgtcagc
gctatcgaagcccgtcagggtggcgtacgctgcgtgatcgttccgaacgatcagatggaa
accccgcactactccgtactgcgcgtgcgtaaaggtgaagagaccccgaccctgagctat
ctgctgccaaaactgcatgaagaagcaatggcgctgccgtctgaagaagacgttccggaa
cgtaaacgtccggaacaaccagcgctggccactttcgtcatgccagatgttccgccagta
ccacaagcgcctgcgcctacacctgcagtcactgcacagccagcctctgtcgtcgcccag
tcctcgccgggtctgctgggccgtttcttctccgcactgaaaggcctgttcgccagcgaa
gctgcgcctgcatcggttgaagtgaaagaagaagagaagaaaaatgcgggcgagaaacaa
gatcgccagcaggatcgtcgtaaatcccgtcagggcaaccgtcgcgatcgtaatgagcgc
cgagattcccgcggtgaaggtaatgaagcgcgtgaaggccgtgacaaccgcgaaggccgc
gaagaaaatcgccgcaatcgccgtgaaaaatcacagcagaatgcagaggcccgcgatgtt
cgccagccagttgccgtagaagaggctgataaggcgaagccgcgtgacgagcagcaaccg
cgccgtgaacgcaatcgccgccgtaatgatgaaaaacgtcaggcgcagcaggatgtgaaa
gagctgagccgcgatgaacaaactgcgccggaaacggaacaggaagagcgtgtacagacg
atgccgcgccgtaagcagcgtcagctgaaccagaaagtccgcgttggcgagcagaatgca
gaaaccgttgttgaaaaggatgctgtccaggacgtacccgctccacgcactgaactggcg
aaagtcgagctgcctgtcgttgcagacagtgccaacgcacaggaacaggatgagaacggg
gatacgcgtgaaaacgcgatgccgcgccgctcacgccgttcaccgcgccacctgcgcgtc
agcggtcagcgtcgccgtcgctaccgcgatgagcgctacccgttgcaatccgcaatgcca
ttgaccgttgcctgcgcatcgccggaaatggcctccggtaaggtatggatcagctatccg
gttgcgcgtcctcaggatgagcagcaggttcaggacagcgaagtggaacagaatgtcgcc
actgagcaggatgtcgctcccgctatcgccgaagcgcaactggtcgccagtcagcccgct
gaagcgccagaagcgtctgctccggttgaaacggccgaaactgcaaccgctgaacctgcg
attgctgaaccgcaaacgcctgttgaagcacctgaacctgtcgtcgttgaaaccacgcat
ccggaagtcattgaaagcccggtagaggatcagccgcagttgattgctgaggaagatcgc
accgtcgctgaagcggtggttgaaaacgtgcagccagcacaacccccagtggttgcagaa
ccggtggctgaaactgccgtggccgaagacgtaacggaagaaactgcgacgccggttatc
gaagtgccggtcatccctgcagcagcgccgccggcggcacgtaagattgccactgcgcca
atgactaaagcgcctgcgccagcctacgtgccggaagcaccgcgtcatagcgattgggta
cgtccggagttcggattcacaggtaaaggagcggcaggcggccacagcgccacgcactcc
gctaccgcgccggcaacaaaaccgccgtcagtcaactaa
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