Kribbella qitaiheensis: F1D05_31480
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Entry
F1D05_31480 CDS
T06749
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kqi
Kribbella qitaiheensis
Pathway
kqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1D05_31480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kqi03019
]
F1D05_31480
03009 Ribosome biogenesis [BR:
kqi03009
]
F1D05_31480
Enzymes [BR:
kqi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F1D05_31480
Messenger RNA biogenesis [BR:
kqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F1D05_31480
Ribosome biogenesis [BR:
kqi03009
]
Prokaryotic type
rRNA processing factors
F1D05_31480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
QNE21618
UniProt:
A0A7G6X5V3
LinkDB
All DBs
Position
6643565..6647095
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AA seq
1176 aa
AA seq
DB search
MLENEPNDTQAADTAASAPEQPAKRAAAKKTVRKRPVKKTAAKAAEAPVPDAADQPVETA
VSTQSDAAAADPAPAPAKRQPAKKAVAKRTVKKAAAKRPAKKAATSQDAFPELTDESAPE
AAVQVPAAEAETQAPAKKTTRKRTPRKSAAARQADLLAEEAAVTDGPVADAEEDEEALAE
AAAALEAAAAEAAMAPAETTRRRRRAPAAAAVLFQAPTDVPAQAAATSPVEATPVEDGSV
KAPSTKRVSTRTRNAKVVPVEADADEVAAEPAEDEQPTGSRRRRSRRSRDAEEVATDRAE
PVFEAARQIEPEDAADDAESDADDVDGEDGAEGTRRRRRRRGGRRRRKPGDGSEDSADEN
DDESEDDAENQSDTDEQDDSEDDSEAGSSSRRRRRRRRRKGEDSGSAADDPDETVVRVRE
PRSKTISNEITAVEGSTRLEAKKQRRREGRAAGRRRAPIVTEAEFLARRESVERTMVIRA
RDDLTQIAVSEDNVLVEHYVTTAEQSSLIGNVYLGRVQNVLPSMEAAFIDIGKGRNAVLY
AGEVDWSTLGAGNGPRKIESVLKSGQAVLVQVTKDPIGHKGARLTNQISLPGRYVVYVPR
GGNGGISRKLPDTERNRLKGILKDIVPDEAGVIVRTAAEGATEEELTADVTRLQAFWEDI
DKKSKSGQAPALLHGEPDLLIRVVRDLFTEDFTKLVISGDDAFDQVSEYVSSVAPHLADR
VQKWSPSPNEQSDVFSNYRIDEQIKKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTG
SGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLELNRDLVLRRLVECLGRD
RTKHQVAEVTSLGLVQMTRKRIGTGLLEAFSENCDHCGGRGLVLHDEPKESRRRADDGRS
RGGQQNQGGQNQGGQSQGSQSQGSQNQGQNQGGQQSNGGQNGHDGEQKSGDGDGDGAKKS
SRSRNRGRGRGRGEGSDEHTESTETPSNGDAAQRVAQIAAATLASGEKANGTDQHGTDEK
VTGAEHQGNDQQASGDQQSSSGADSAERRDGGEAAQSEERAPGSQRSRRRRGGSGQAGTA
VAEQDGAQSSQEPARGDSSGRGGEQVAAEQGNSAAEQGQDGAEQEKAEQTGSGRNGSTRR
RRSSRGRGAASSNEGDAGNSGTDQPVSAQELASTPV
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagaacgagccgaacgacacccaggccgccgatacggctgcctccgcccccgag
cagcccgccaagagggcggctgccaagaagacggtccgcaagcgcccggtcaagaagacc
gccgccaaggccgccgaagctcccgtgcccgacgctgccgaccagccggtcgagaccgcg
gtcagcacccagtccgacgccgcggccgccgatccggcgcccgctccggccaagcgtcag
ccggccaagaaggccgtcgcaaagcggaccgtgaagaaggccgcggccaagcgcccggcg
aagaaggccgccacgagccaggacgcgttcccggaactgaccgatgagtcagcgcccgag
gcagccgtacaggtcccggcggctgaggcggagacccaggcgccggcgaagaagaccacc
cgcaagcgcaccccccgcaagagcgccgccgcgcgccaggcggatctgctcgctgaggag
gccgccgtcaccgacggcccggtcgccgacgccgaagaggacgaggaagccctcgccgaa
gcagccgccgcgctcgaggccgccgctgccgaggccgcaatggctcccgccgagaccacc
cgccgtcgccggcgcgcgcctgccgctgctgccgtgctgttccaagcgcctaccgacgta
ccggcccaggcggccgcgaccagcccggtcgaggccacccctgtcgaggacggttccgtc
aaggccccctccacgaagcgcgtttccactcggacccgtaacgccaaggtcgtgccggtc
gaggctgacgccgacgaggtagcggccgagccggccgaggacgagcagccgaccggcagc
cgccgtcgccggagccgtcgcagccgggacgccgaagaggtcgccaccgaccgcgccgag
ccggtgttcgaagcggcccgccagatcgagccggaagacgccgccgacgacgccgagtcc
gatgccgatgacgtcgatggtgaggacggtgccgagggcacccgtcgccgccgtcgccgc
cgcggtggccgtcgtcgccgcaagccaggggacggctccgaggacagcgccgacgagaac
gacgacgagtccgaggacgacgcggagaaccagtccgacaccgacgagcaggacgactcc
gaggacgactcggaagccgggagctcctcgcgccgccgtcgccgtcgtcgccgccgcaag
ggcgaggacagcggcagcgccgccgacgacccggacgagaccgtcgtacgggtccgtgag
ccgcgcagcaagaccatctcgaacgagatcaccgcggtcgagggctcgacccggctggag
gcgaagaagcagcgccgccgcgagggtcgcgccgccggtcgccgccgggcgccgatcgtg
accgaggccgagttcctggcccggcgcgagtcggtcgagcggacgatggtgatccgggcc
cgcgacgacctgacccagatcgcggtctccgaggacaacgtgctcgtggagcactacgtc
accaccgccgagcagagttcgctgatcggcaacgtgtacctcggccgcgtccagaacgtg
ctgccgagcatggaggccgcgttcatcgacatcggcaagggccgcaacgcggtcctgtac
gccggtgaggtcgactggtccacgctcggcgccggcaacggcccgcgcaagatcgagtcg
gtgctcaagtccggccaggcggtcctggtccaggtgaccaaggacccgatcggccacaag
ggcgcccggctgaccaaccagatcagcctgcccggccggtacgtcgtgtacgtgccgcgc
ggcggcaacggcggcatcagccgcaagctccccgacaccgagcggaaccgcctgaagggc
atcctcaaggacatcgttccggacgaggcgggcgtgatcgtccggaccgcggccgagggc
gccaccgaggaggagctcaccgccgacgtcacccgcctgcaggcgttctgggaggacatc
gacaagaagtcgaagtccggccaggcgcccgcgctgctgcacggcgagccggatctgctg
atccgggtggtccgcgacctgttcaccgaggacttcaccaagctggtcatctccggcgac
gacgccttcgaccaggtcagcgagtacgtctcgtccgtggccccgcacctggccgaccgg
gtccaaaagtggagcccgtcgcctaatgagcagagcgacgtcttctcgaactaccggatc
gacgagcagatcaagaaggcgctcgaccgcaaggtctggttgccgtcgggtggttcgctg
gtcatcgaccggaccgaggcgatgaccgtcgtcgacgtcaacaccggcaagttcaccggc
tccgggggcaacctcgaggagacggtcaccaagaacaacctggaagcggccgaggagatc
gttcgccagctccggctgcgcgacatcggcggcatcatcgtgatcgacttcatcgacatg
gtgctggagctcaaccgcgacctcgtactgcgccggctagtggagtgcctgggccgggac
cggaccaagcaccaggtcgccgaggtcacctcgctgggcctggtccagatgacccgcaag
cggatcggtaccggcctgctcgaggcgttcagcgagaactgcgaccactgtggtggccgc
gggctggtcctgcacgacgagccgaaggaatcgcgccgtcgcgccgacgacggccgcagc
cgcggcggtcagcagaaccagggcggccagaaccagggcggccagagccagggcagccag
agccagggcagccagaaccaaggccagaaccagggcggtcagcagagcaacggtggccag
aacggtcacgacggcgagcagaagagcggcgacggcgacggcgacggtgcgaagaagagc
tcgcgcagccggaaccgcggtcgtgggcgcggtcgcggtgagggttccgacgagcacacc
gagtcgaccgagaccccgtcgaacggtgacgccgctcagcgcgtcgctcagatcgccgca
gccaccctcgccagtggcgagaaggccaacggcaccgatcagcacggcaccgacgagaag
gtcaccggagccgagcaccaaggcaacgaccagcaggccagtggcgaccagcagtcgtcg
tcgggtgcggattctgctgagcgcagggacggtggcgaggccgcccagagcgaggagcgg
gcgccgggtagccagcgcagcaggcgtcgccgcggcggttccggccaggccggcaccgcc
gtagcggagcaggacggcgcgcagagctcgcaggagccggctcgcggcgacagcagcggg
cgtggcggcgagcaggttgccgccgagcagggcaacagcgctgctgagcagggccaggac
ggcgctgagcaggagaaggcagagcagaccggctccggccggaacggcagcaccaggagg
cggcgtagcagccgtggccggggtgctgcgagcagtaacgaaggtgacgcgggcaacagc
gggaccgaccagccggtcagtgcccaggagctggcgtccaccccggtttga
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