Loxodonta africana (African savanna elephant): 100676123
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Entry
100676123 CDS
T04351
Symbol
PTCH1
Name
(RefSeq) protein patched homolog 1
KO
K06225
patched 1
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav04024
cAMP signaling pathway
lav04340
Hedgehog signaling pathway
lav04360
Axon guidance
lav05200
Pathways in cancer
lav05205
Proteoglycans in cancer
lav05217
Basal cell carcinoma
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
100676123 (PTCH1)
04024 cAMP signaling pathway
100676123 (PTCH1)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
100676123 (PTCH1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100676123 (PTCH1)
05205 Proteoglycans in cancer
100676123 (PTCH1)
09162 Cancer: specific types
05217 Basal cell carcinoma
100676123 (PTCH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Patched
Sterol-sensing
Bac_rhamnosid6H
Motif
Other DBs
NCBI-GeneID:
100676123
NCBI-ProteinID:
XP_023401057
LinkDB
All DBs
Position
Unknown
AA seq
1539 aa
AA seq
DB search
MASAGNAAEPQDRGCGSGCSGAVGRPAGGGGGRRRRTAGLRRPAAPDLDYLHRPSYCDAA
FALEQISKGRGQRRVNAAARSNQRPAGTPACTGLGPSPTHSAPSPQRLKPTPGGAALDVR
GGGPPVAAMHSPRCRPTLIYDQPPPHAACGPDGFQPRGRVPDLQPPRTGLQHPGADGGSS
GGSPRAVSVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPKEEGANVLTTEALRQHLDSAL
QASRVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQS
GTAYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPD
CPVTAPNKNATKPLDVALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHALQTM
FQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRTYVEVVHQSVSHNSTQKVLSFT
TTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALSVAA
GLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEVIEKQKKRD
LGTAKAPSCSLTLSTMVSPPQDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAF
SLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCFTSPCVSRVIQVEPQAYLET
HDNTRYSPPPPYSSHSFAHETHITMQSTVQLRTEYDPHTHVYYTTAEPRSEISVQPVTVT
QDTLSCQSPESTSSTRDLLSQFSDSSLHCLEPPCTKWTLSSFAEKHYAPFLLRPKAKVVV
IFLFLGLLGVSLYGTTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNMYIVTQKADYP
NIQHLLYDLHKSFSNVKYVMLEENKQLPKMWLHYFRDWLQGLQDAFDSDWETGKIMPNNY
KNGSDDGVLAYKLLVQTGSRDKPIDISQLTKQRLVDADGIINPSAFYIYLTAWVSNDPVA
YAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEK
VRTICNNYTSLGVASYPNGYPFLFWEQYIGLRHWLLLSISVVLACTFLVCAVFLLNPWTA
GIIVMVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNR
RAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPV
LLSFFGPYPEVSPASGLNRLPTPSPEPPPSVVRFAVPPSHTNNGSDSSDSEYSSQTTVSG
ISEELRHYEAQQGCGSPAHQVIVEATENPVFARSTVVHPDSRHHPPSNPRQQSHLDSGTL
PPGRPGQQSRRDAPREGLRPPPYRPRRDAFEIPTEGHSGPSNRDRMGPRGARSHKPRNPA
FTAMGSSVPGYCQPITTVTASASVTVAVHPQPGPGPGHSRNPRGGLCPGYEDYPETDHGL
FEDPHVPFNVRCERRDSKVEVIELQDVECEERPRGTSSN
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggctggtaacgccgcggagccccaggaccgcggctgcggcagcggctgcagc
ggggccgtggggcggccggctggcggtggcggcgggaggcgcagacggaccgcagggttg
cgccgccccgcggcgccggacctggactatctgcaccggcccagctactgcgacgccgcc
ttcgctctggagcagatttccaagggccgcggccagcgccgggtaaacgccgccgccagg
agcaaccagcgcccagccgggacccccgcctgcaccggcctgggcccttccccgacgcat
tcggccccctccccccagcgcctcaagcccactccagggggtgctgcgctggacgtgcgt
gggggcggcccgcctgttgccgcgatgcactccccacggtgcaggccgactttgatttat
gatcagcccccgccccacgccgcttgcggaccggatgggttccagccccgagggagagtc
cctgacctgcagccacccagaaccgggctgcagcaccctggggctgacgggggctcctcc
ggcgggagcccgcgagcggtgtcagttggtggacgagtaagtcgtgaattaaattatact
cgtcagaagattggagaagaggccatgtttaatcctcaactcatgatacagaccccgaaa
gaagaaggtgctaatgtcttgaccacagaagccctccgacaacacctggactcagccctc
caggccagccgagtccatgtatatatgtacaacagacagtggaaattggaacatttgtgc
tataaatcaggagagcttatcacagaaacaggttacatggatcagataatagagtatctt
tacccttgtttaattattacacctttggactgcttctgggaaggggcaaaattacaatcc
gggacagcttatctcctaggtaagcctcctttgcggtggaccaactttgaccctttggaa
ttcctagaagagttaaagaaaataaactaccaagtggacagctgggaggaaatgctgaat
aaggctgaagttggtcatggttacatggaccgcccctgcctcaatccggctgatccagac
tgccctgtcaccgcccccaacaaaaatgcaaccaaacctcttgatgtggctcttgttttg
aacggtggatgtcatggcttatccagaaagtatatgcactggcaagaggagttgattgtg
ggtggtacagtcaagaacagcactggaaaactggtcagcgcccacgccttgcagactatg
tttcagttaatgacccccaagcaaatgtatgaacacttcaagggctatgagtatgtctca
cacatcaactggaatgaggacaaagcagcagccatcctggaagcctggcagaggacctac
gtggaggtggttcatcaaagcgtctctcacaactctactcagaaggtgctttcctttact
acgacgaccctggatgacatcctaaaatccttctctgatgtcagcgtcatccgagtggcc
agtggctacttactgatgcttgcctatgcctgtttaaccatgctgcgctgggactgctcc
aagtcccagggtgccgtggggctggctggcgtcctgttggttgcactgtcagtggctgca
ggattgggcctgtgctcattgatcgggatttcctttaacgctgcaacaactcaggttttg
ccatttcttgctctgggtgttggcgtggatgacgttttcctcctggctcatgcgtttagt
gaaacaggacagaataaaagaatcccttttgaggtaatagaaaaacaaaagaagagagat
ttggggactgccaaagctccctcttgttctctgactctaagcactatggtttcccctcct
caggacaggaccggggagtgcctcaagcgcacaggagccagtgtggccctcacgtccatc
agcaacgtcacggctttctttatggctgccttgatcccaattccggctctgcgggcattt
tccctccaggcggctgtagttgtagtgttcaattttgccatggttctgcttatttttcct
gcaattctcagcatggatctgtatcggcgtgaggacaggagactggatattttttgctgt
ttcacaagcccctgtgtcagcagagtgattcaggtggagcctcaggcttacctagagacc
catgataacacccgctacagccccccgccaccatacagcagccatagctttgcccacgag
acacacatcaccatgcagtccacagtccagctgcgcacagagtacgacccccacacgcac
gtgtactataccactgcagagccacgctccgagatctccgtgcagcctgtcaccgtgacc
caggacaccctcagctgccagagccccgagagcaccagctctacaagggacctgctgtcc
cagttctctgactccagcctccactgcctcgagcctccctgtaccaagtggacactttcc
tcttttgctgagaagcactatgctcctttcctcttgagacccaaagccaaggttgtggtg
atcttccttttcttaggcttgctaggggtcagcctttatgggaccacccgagtgagagat
gggctggaccttacagacattgtaccccgagaaaccagagaatatgactttattgctgca
cagttcaaatacttctctttctacaacatgtatatagtcacccagaaagcagactacccg
aacatccagcacttactttatgacttgcacaagagtttcagtaatgtgaagtatgtcatg
ttggaagaaaataaacagctgcccaagatgtggctgcactacttcagagattggctccaa
ggacttcaggatgcatttgacagtgactgggagactgggaaaatcatgcccaacaattac
aaaaatggatcagatgatggagtccttgcctacaaactcctggtgcaaaccggcagccgc
gataaacccatcgacatcagtcagttgactaaacagcgtctggtggatgcagatggcatc
attaatccaagtgctttctacatctacctgactgcatgggtcagcaacgaccccgtcgct
tacgccgcctcccaggccaacatccggccccatcggcctgaatgggtccacgacaaagct
gactacatgccagaaaccaggctgcgaatcccggcagcagaacccattgaatacgctcag
ttccctttctacctcaacggcttgcgtgacacctcggactttgtggaagcgattgaaaaa
gtacgaacaatctgcaacaactacacaagcctgggggtcgccagctaccccaacggctac
cccttcctcttctgggagcagtacatcgggcttcgccactggctcctgctgtccatcagc
gtggtgttggcctgcacatttctggtgtgcgccgtcttcctcctgaacccctggactgcc
gggatcattgtgatggtcctggctttgatgacagtggagctctttggcatgatgggcctc
attggaatcaagctgagtgctgtgcccgtggtcatcttgattgcgtccgtcggcatagga
gtggaattcactgtccatgttgctttggcctttctcacagccattggtgataagaaccgc
agggcagtgctcgccctggagcacatgtttgcacccgttctggatggtgctgtgtccact
ctccttggggtcctgatgcttgcagggtctgaatttgatttcattgtcaggtatttcttt
gcggttctggccatcttaacaatcctgggtgttctgaacggattggttttgctcccagtc
cttttgtccttctttgggccatatcctgaggtgtctccagccagcggactgaaccggcta
cctactccgtcccctgagccgccccccagcgttgtcaggtttgctgtgccccccagtcac
acgaacaacgggtccgattcctccgactcggagtacagttctcagacgacggtgtccggc
atcagcgaggagctgcggcactacgaggcccagcagggctgcggcagccctgcccaccag
gtgattgtggaagccacagaaaaccccgtcttcgcccgctccactgtggtccatcccgat
tccagacaccacccaccctccaaccctcgccagcagtcccacctggactcggggaccctg
ccaccaggacggccaggccagcagtcccgcagggacgcccccagagaagggctgcggccg
cccccctacagaccgcgcagggacgcttttgaaattcctactgaagggcattctggtcct
agcaatagggaccgcatgggcccccgaggagcccgttctcacaagcctcggaacccagca
ttcactgccatgggcagctccgtgcccggatactgccaacccatcaccactgtgactgct
tctgcctccgtgacagttgctgtgcacccccaacctggaccagggcctgggcacagccgg
aacccccggggggggctctgcccgggctatgaggactaccccgaaactgaccacgggctg
tttgaggacccccatgtgccttttaatgtccggtgtgagagaagggattcgaaagtggaa
gtcatagagctgcaagatgtggaatgtgaggagaggccccggggaaccagctccaactga
DBGET
integrated database retrieval system
