Lysobacter enzymogenes M497-1: LEN_2082
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Entry
LEN_2082 CDS
T04598
Name
(GenBank) conserved hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lem
Lysobacter enzymogenes M497-1
Pathway
lem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LEN_2082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lem03019
]
LEN_2082
03009 Ribosome biogenesis [BR:
lem03009
]
LEN_2082
Enzymes [BR:
lem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LEN_2082
Messenger RNA biogenesis [BR:
lem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LEN_2082
Ribosome biogenesis [BR:
lem03009
]
Prokaryotic type
rRNA processing factors
LEN_2082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAV97569
UniProt:
A0A1J1E5M3
LinkDB
All DBs
Position
complement(2458559..2462173)
Genome browser
AA seq
1204 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQNLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFIDY
GADRHGFLPLKEISRDYFQPGVDHHKAGLRELLREGQEIVVQVDKEERGNKGAALTSFIS
LAGRYMVLMPNSPSAGGVSRRIEGDDRAALKEAMDKLTIPDDMGVIIRTAGVGRDAEELQ
WDLDYLVSVWKAITDEALKKPAPFLVYQESRLIIRALRDYMRPDIGEILVDTDEMYAEAR
QFVEQVMPHNLRKLKKYADDTPLFNRFQIESQIENAYERTVRLPSGGALVIDQTEALTAI
DVNSARATKGGDIEETAFNTNLEAAEEVARQMRLRDLGGLVVIDFIDMSSNRHQREVENR
LSHALKQDRARVQIGRISRFGLLELSRQRLRPSLGESSQLVCPRCEGHGRMRSVESLSLS
ILRVAEEHAMKENTGQVLVQAPTEIANFLLNEKRRALMEIEARHDAPIVIVADEHLETPH
YEVTRVRENEVGEETAKPSYQRGTQRKLPVHALTKAHLNIPEAPAVTNVRPAQPAPLREP
REAPAAAAPAPVPAPAPAPVAAPTHSVGLVERILRIFRGTPQPAAAAPEPAARNQDGSRG
NGGRNESRGERGNGQRRNENRNNGKGGRDGRRDEPRQQDAQPRREKQPQQQGQAQAGGAQ
AQQPGQQKQPKQGQPQNPQAPKQQQPQQPKQAQNSPAKPQQDAAAAQAGNANAHNGNPAQ
NGNAPRPPREPRPPRQDAAAEAVVAAAVVAPVAAVVATGTAPAAEAPLKNEAVEAAVAAD
ANAVGAAAGEIANNDAPTDAAGDAGESGGRRRRGRRGGRRRRRGNGENAGAEGGADGALD
ADGGFDDEDDAGAEPGQAPAAAHRSQPEFDFDDVAAPAPARNAAAAAAPAAVAAAAVAAA
PVRREDAANVQADAPVDSAQAEAANRDAAAPVVSERASYAAVAPVQAEADHYAVAKTDAP
TDSGESAFAPKAEAASAEAVAAVEAEAPAAAAVEVAAAEPVPAPVVVAPVEPSSYADSRA
EAPAQAEPAAEAAPAQVAAESAIQAQPQAETAPAVVAAAPVEPAVTVEATPVETAVVATP
EPVVEPVVAVAETVQPSEAELAQAEAAAQTAASPAREAAQAVPGFSFAAPPEAPAAPVAE
AAVDAESAAGEPASPLLPRTAGLFDGLPHPVAPAPVADNAEAAADGESKPADGDNGDGSH
EHRA
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgatcaacgcgacgcaggcggaagaactgcgcgtggccatcgtcgac
ggccagaacctgtacgacatcgacatcgaacagccgtcgaaggaacagaagaagtccaac
atctacaagggccgcatcactcggctcgaaccctcgctcgaagccgccttcatcgattac
ggcgccgaccgccacggcttcctgccgctgaaggaaatctcccgcgactacttccagccc
ggcgtggaccaccacaaggccggcctgcgcgagctgctgcgcgaaggccaggaaatcgtg
gtccaggtcgacaaggaagagcgcggcaacaagggcgccgccctgaccagcttcatctcc
ctggccggccgctacatggtgctgatgccgaactcgcccagcgccggcggcgtctcgcgc
cggatcgagggcgacgaccgcgccgcgctcaaggaggcgatggacaagctgaccatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtcggccgcgacgccgaagagctgcag
tgggacctggactacctggtcagcgtgtggaaggcgatcaccgacgaggcgctgaagaag
cccgccccgttcctggtctaccaggagtcgcgcctgatcatccgcgccctgcgcgactac
atgcgcccggacatcggcgagatcctggtcgacaccgacgagatgtacgccgaggcgcgc
cagttcgtcgagcaggtgatgccgcacaacctgcgcaagctcaagaagtacgccgacgac
accccgctgttcaaccgcttccagatcgaatcgcagatcgagaacgcctacgagcgcacc
gtgcgcctgccctccggcggcgcgctggtgatcgaccagaccgaggcgctgaccgcgatc
gacgtcaactcggcgcgcgccaccaagggcggcgacatcgaggagaccgcgttcaacacc
aacctggaagccgcggaagaagtcgcgcgccagatgcgcctgcgcgacctcggcggcctg
gtggtgatcgacttcatcgacatgtcgtccaaccgccaccagcgcgaggtcgagaaccgc
ctgtcgcacgcgctcaagcaggaccgcgcgcgcgtgcagatcggccgcatctcgcgcttc
ggcctgctcgaactgagccgccagcgcctgcgcccgtcgctgggcgagtccagccagctg
gtctgcccgcgctgcgagggccacggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcctgcgcgtggccgaagagcacgcgatgaaggaaaacaccggccaggtgctggtgcag
gcgccgaccgagatcgccaacttcctgctcaacgagaagcgccgcgcgctgatggagatc
gaagcgcgccacgacgcgccgatcgtcatcgtcgccgacgagcatctggaaaccccgcac
tacgaagtcacacgcgtgcgcgagaacgaagtcggcgaggaaaccgccaagcccagctac
cagcgcggcacccagcgcaagctgccggtccacgcgctgaccaaggcccacctcaacatt
cccgaagcgccggccgtcaccaacgtgcgcccggcccagcccgcgccgctgcgcgagccg
cgcgaagcgccggccgccgccgcgccggcgcccgtcccggctccggcgcccgcgccggtg
gccgcgccgacccactcggtcggcctggtcgagcgcatcctgcgcatcttccgcggcact
ccgcagccggctgcggccgcaccggaaccggccgcgcgcaaccaggacggcagccgcggc
aacggcggccgcaacgagtcgcgcggcgagcgcggcaacggccagcgccgcaacgagaac
cgcaacaacggcaagggtggccgcgacggccgccgcgacgagccgcgccagcaggacgcg
cagccgcgtcgcgaaaagcagccgcagcaacagggccaggcccaggccggcggcgcccag
gcgcagcagccgggccagcagaagcagcccaagcagggccagccgcagaacccgcaggcg
cccaagcaacagcagccgcagcagcccaagcaggcgcagaactcgccggccaagccgcag
caggacgcggccgcggcgcaggccggcaacgccaatgcgcacaacggcaacccggcccag
aacggcaatgcgccgcgtccgccgcgcgagccgcgtccgccgcgccaggacgccgccgct
gaggccgtcgtcgccgccgcggtcgtcgcgccggtcgctgcggtcgtcgccaccggcacc
gcgccggctgccgaggccccgctgaagaacgaagccgtcgaagcggctgtcgccgccgac
gccaatgctgtcggcgccgctgctggcgagatcgcgaacaacgacgccccgaccgatgcc
gccggcgacgccggcgaaagcggcggccgtcgtcgccgcggccgtcgcggtggccgtcgc
cgccgtcgcggcaacggcgagaacgccggtgccgagggcggcgccgacggcgcgctcgac
gccgacggcggtttcgacgacgaggacgatgccggcgccgaaccgggccaggccccggcc
gccgcgcaccgctcgcagccggagttcgacttcgacgacgtcgccgcgccggcaccggcg
cgcaacgccgccgccgctgccgcaccggccgccgtcgcggctgctgcggttgccgctgcg
ccggtccgtcgcgaggacgccgccaacgtccaggccgacgctccggtcgattcggcccag
gccgaagccgcgaaccgcgatgcggccgctccggtcgtcagcgaacgcgcgtcctacgct
gccgtcgccccggtccaggccgaagcggaccactacgctgtcgccaagaccgacgctccg
accgattccggcgaaagcgcgttcgcgccgaaggccgaggccgcgagcgctgaagccgtc
gctgcggtcgaggccgaagcgcctgcggccgctgcggtcgaagtcgctgccgccgagccg
gttccggcgccggtggtggtcgccccggtcgagccgtcgagctacgccgacagccgcgcc
gaggccccggcccaagcggagccggccgccgaggccgctccggcccaggtcgccgctgag
agtgcgattcaggctcagccgcaggccgaaaccgcgcctgcggtcgtcgctgccgcgccg
gtcgagccggccgtgaccgtcgaagcgaccccggtcgaaacggcggtcgtggcgacgccg
gagccggtcgtcgagccggtcgtggcggtcgccgaaaccgtgcagccgagcgaagccgaa
ctggcccaggccgaagccgccgctcagaccgcggcctcgccggcgcgcgaagccgcccag
gccgtgccgggcttcagcttcgccgcgccgcccgaagcgccggccgcgccggtcgccgaa
gcggccgtcgacgccgagtccgccgccggcgagcccgcctcgcccttgctgccgcgcacc
gccggcctgttcgacggcctgccgcatccggtcgcgccggcgccggtcgccgacaacgcc
gaagcggcggccgacggcgagagcaagcccgccgacggcgacaacggcgacggctcgcac
gagcaccgcgcctga
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