Leptolyngbya sp. O-77: O77CONTIG1_02770
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Entry
O77CONTIG1_02770 CDS
T04251
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
let
Leptolyngbya sp. O-77
Pathway
let03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
let00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O77CONTIG1_02770 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
let03019
]
O77CONTIG1_02770 (rne)
03009 Ribosome biogenesis [BR:
let03009
]
O77CONTIG1_02770 (rne)
Enzymes [BR:
let01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
O77CONTIG1_02770 (rne)
Messenger RNA biogenesis [BR:
let03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O77CONTIG1_02770 (rne)
Ribosome biogenesis [BR:
let03009
]
Prokaryotic type
rRNA processing factors
O77CONTIG1_02770 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DUF2946
Motif
Other DBs
NCBI-ProteinID:
BAU42948
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All DBs
Position
3086440..3088545
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AA seq
701 aa
AA seq
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MSKQIIIAEQHRIAAVFSGDQIQELIVATGSHQVSDIYLGIVENVLPGIDAAFVNIGDSE
RNGFIHVSDLGPLRLKKAAAPITELLVPQQKVLVQIMKEPTGNKGPRLTGNISLPGRYLV
LMPSGRGVNLSRRIRNENERNRLRALAILVKPAGMGLLVRTEAEGVPEEAIIEDLEALQK
QWEAIQLEAANTRPPCLLNRDDDFIQRVLRDVYSADVNRIVVDSHTGAKRVKQHLMNWSG
GKAPVGVLIDHHRERTPILEYFRVNAAIREALKPRVDLPSGGYIIIERTEALTVIDVNSG
SFTRSATARETVLWTNCEAAAEIARQLRLRNIAGVIVVDFIDMDSHRDKLQVLEQFNKAL
RADKARPQIAQLTELGLVELTRKRQGKNIYELFGKACPTCGGLGHVVHLPGDAEEVAVPA
EVPRTFPAAHESRAVQLREPWDAPELEFGSPALAEQQELDLTNHPSYQDRSRVDSRRRRR
SRPPRSAEPVVRGNGGRSPDLEADTDAPVALEELPVLNGSTPTLGKESREGREGREGRSE
KPERGGRGRRERAAAEPQQVITVEMTPEEQEIYALMGVSPLVLAPEPVKDPKTTVVMVAL
PGQGRQGGNSTASGTTSGNGSGISAALLQEKEKAESTPAPDPILKSAALAEPVANAESLP
AEVAIAPVSSDPEDGNAAGDSSAPRRRRRRRSSVSADESAS
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacaaattattattgctgagcagcatcgaatcgccgccgtcttttcaggagac
caaattcaagagctaattgttgcaaccggcagccaccaggtcagcgacatctacttgggc
attgtggaaaatgtcttgccggggattgatgctgcctttgtgaacattggagacagcgag
cgcaacggctttatccatgtgtctgacctcggtccgctccgcctcaaaaaagcggccgcc
cccatcaccgaactgctcgtgccccagcaaaaggtgctggtgcaaattatgaaagagccg
accggcaataaaggaccccggctcaccggaaacatcagcctgcccggacgctatctggta
ttgatgccctctggacggggcgtgaatctgtcgcgccgaattcgcaatgaaaacgagcga
aatcgcctgcgggccctggcgattttggtaaaaccagcgggcatggggttattggtgcga
accgaagcggaaggcgtgccggaagaagccattatcgaagatttggaagcgctgcaaaaa
cagtgggaagctattcagctagaagctgccaatacccgtccgccctgtctgctgaatcga
gatgatgattttattcagcgggtgctgcgggatgtctacagcgctgacgtaaaccgtatc
gtggtggactcccatacgggggcaaagcgcgttaaacagcatttgatgaactggagcggc
ggtaaggctccggtcggcgtgttgattgaccaccaccgcgaacgcacgcccattctggaa
tattttcgggtgaatgcggcgattcgcgaggcgctgaagccgcgagtagacttgccttct
ggcggatacatcatcatcgagcgcaccgaagcgctgacggtgattgacgtgaactctggt
tcctttactcgctctgcgacagcgcgagaaaccgtgctgtggacgaactgcgaggcggca
gcagaaattgcccgccagctccggcttcgcaacattgccggggtgattgtggtggacttt
attgatatggattcccaccgggacaaactccaggttttggagcagtttaataaggcgctg
cgggctgataaggcccggccccaaattgctcagctaacggaactgggactggtggaactg
acccggaagcgccaagggaaaaatatttacgaattgtttggaaaggcgtgtccgacctgc
ggcgggctggggcatgtggtgcatttgcccggagatgctgaggaggtggctgtgcctgct
gaagtgccccgcacgttcccggctgctcatgagtcgcgggctgtgcagttgagagagcct
tgggacgctccggagctagagtttggctctccggcactggcagagcagcaggagctagat
ttgaccaaccaccccagctatcaagaccgaagccgagtggatagtcgccgccgccgccgc
agccgcccgccccgctctgctgagccggtggtgcgggggaatggggggcgatcgcccgac
cttgaggcggatacagacgcgcccgttgcgcttgaagaactgcccgtgctgaacggctcc
acaccaaccctaggaaaagagagccgagaggggcgagaggggcgggaagggcgctcagaa
aagccagagcggggtgggcgcgggcgacgagagcgagccgccgcagagccacagcaggtg
atcacggtggagatgaccccagaggagcaagagatttatgcgctgatgggggtttcgccg
ctggtgttggcaccggaaccggtgaaagatccaaaaacaacggtggtgatggttgcgctg
ccggggcaggggcgacaggggggcaactcgacggcttctggtacaacttctggcaatggc
agcgggatctctgctgcgctgctacaagaaaaagaaaaagccgaatctacgccagcgcca
gaccctattctgaaatcggctgcgctggctgagcctgtggcaaatgcagaaagcctgccc
gctgaagtcgcgatcgccccggttagttccgaccctgaggacggcaatgcggctggagat
agcagcgcccctcgtcgtcgccgccgccgccgatcgtctgtgtcagccgacgagtcggcc
tcctag
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