Lysobacter gummosus: LG3211_2937
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Entry
LG3211_2937 CDS
T04163
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lgu
Lysobacter gummosus
Pathway
lgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG3211_2937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgu03019
]
LG3211_2937
03009 Ribosome biogenesis [BR:
lgu03009
]
LG3211_2937
Enzymes [BR:
lgu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LG3211_2937
Messenger RNA biogenesis [BR:
lgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LG3211_2937
Ribosome biogenesis [BR:
lgu03009
]
Prokaryotic type
rRNA processing factors
LG3211_2937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ALN91901
LinkDB
All DBs
Position
3280733..3284302
Genome browser
AA seq
1189 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQNLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GAERHGFLPLKEISRDYFQPGVDHNKAGLRELLREGQEIVVQVDKEERGNKGAALTSFIS
LAGRYMVLMPNSPTAGGVSRRIEGDDRAALKEAMDKLTIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLSIWKAVTDEALKKPAPFLLYQESRLIIRALRDYMRADIGEILVDTDEMYAEAR
EFVEQVMPHNLRKLKKYVDETPLFNRFQIESQIENAYERTVRLPSGGALVIDQTEALTAI
DVNSARATKGGDIEETAFNTNLEAAEEVARQMRLRDLGGLVVIDFIDMSSNRHQREVENK
LQNALKQDRARVQIGRISRFGLLELSRQRLRPSLGESSQLVCPRCDGHGRMRSVESLSLS
ILRVAEEHAMKENTGQVLVQAPTEIANFLLNEKRRALMEIEQRHDSPIVIVADEHLETPH
YEVTRVRENEIGEETTKPSYQRGTQRKLPVHALTKAHLNIPDAPAVTNVKPTQPAPLREP
REASVAVAPAPAPVAAPVAAPTHSIGLVQRILRIFRGAPQPAATTPEPAGGRPQDGRNGR
GERNDRGNGQRRGNDRNERNGKGGRDGARRDEARQDREPQARRDKPQVQVQANAQNGQAQ
QPKQKQPQPQQPKQAQQPKPQNAQQNPPPQPKPQGEERNAQANAGNGQAPRAPRNEPKPP
RQDAAAETAAAVAVPAAAAAAVAAPLATPPVSDDTTLKTEAAVAETATATVESREGDAAQ
ADGTGEGGGRRRRGRRGGRRRRRGNGEAGAAGEGQGQDENGFDDEDDMGAEPAAAPAAAH
RSQPEFDFEDDSGAAAPRAQNAPAATTAAVVAAAASSTFVPSRESAADGKPSFAHFGEHA
HGDAEAAKPVKTERAVFAAEPVAVESAAAEPAPAVSAQVESAPAASTQAEPVRHETVATP
APAAVATSFTAPASSFAQPASSFAADVPAATPAQAAVEAVEHAKPAIAAVSSGASAQPRE
SAPAQPEKVEPSARIEPTVVEPVVVESPTVVETAVIEPVVIEPAVTPRDENPGEAEASAA
NVATVSPAVEAAIGLPVQPAAPIVVAPIETAPTAFATPVASAPTAEIEPIASEQASPLTP
RTGGLFDTLPHPAAVNADAASDTAQDEEGKTGDGEHDGGPDDGQHERRA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgatcaacgcgacgcaggcggaagaactgcgggtcgccatcgtcgac
gggcaaaacctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaac
atctacaaaggccgcatcacccggctggagccctcgcttgaggccgctttcgtcgaatac
ggcgccgaacgccacggcttcctgccgctgaaggaaatctcccgcgactattttcagccc
ggcgtggaccacaacaaggccggcctgcgcgagctgttgcgcgagggccaggagatcgtg
gtccaggtcgataaggaagaacgcggcaacaagggcgccgccctgaccagcttcatctcg
ctggccggccgctacatggtgctgatgcccaactcgcccaccgccggcggcgtttcgcgc
cggatcgagggcgacgaccgcgccgccctcaaggaggcgatggacaagctcaccatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtcggccgcgacgcggaagagctgcag
tgggacctggattacctgctgagcatctggaaggccgtcaccgacgaagccctgaagaag
ccggccccgttcctgctgtaccaggaatcgcgcctgatcatccgcgccctgcgcgactac
atgcgcgccgacatcggcgagatcctggtcgataccgacgagatgtacgccgaggcgcgc
gagttcgtcgagcaggtcatgccgcacaacctgcgcaagctcaagaagtacgtcgacgaa
accccgctgttcaaccgcttccagatcgaatcgcagatcgagaacgcctacgagcgcacc
gtgcgcctgccctccggcggcgcgctggtgatcgaccagaccgaagcgctgaccgcgatc
gacgtcaactccgcgcgcgccaccaagggcggcgacatcgaagaaaccgcgttcaacacc
aacctggaagcggcggaggaagtcgcgcgccagatgcgcctgcgcgacctgggcggcctg
gtggtgatcgacttcatcgacatgtcgtccaaccgccatcagcgcgaggtcgagaacaag
ctgcagaacgcgctcaagcaagaccgcgcgcgcgtgcagatcgggcgcatctcgcgcttc
ggcctgctcgaactcagccgccagcgcctgcgcccgtcgctgggcgaatccagccagctg
gtgtgcccgcgttgcgacggccacggccgcatgcgcagcgtcgaatcgctgtcgctgtcg
atcctgcgcgtggcggaagagcacgcgatgaaggaaaacaccggacaagtgctggtgcag
gcgccgaccgagatcgccaacttcctgctcaacgaaaagcgccgcgcgctgatggagatc
gagcagcgccacgactcgccgatcgtcatcgtggccgacgaacacctggaaaccccgcac
tacgaagtcacccgggtgcgcgagaacgaaatcggcgaagaaaccaccaagcccagctac
cagcgcggcacccagcgcaagctgccggtgcatgctctgaccaaggcgcatctgaatatt
ccggatgcgccggcggttaccaatgtgaagcccacccagccggcgcccttgcgggaaccg
cgcgaagcgtccgtggcggtggctcccgccccggcgccggtcgctgcgcccgtcgccgcg
ccgacccactcgatcggcctggtccagcgcatcctgcggatcttccgcggcgcgccgcag
ccggccgcgaccacgcccgaacccgccggcggccgtccccaggacggtcgcaacggccgc
ggcgagcgtaacgatcgcggcaacggccagcgccgcggcaacgatcgcaacgagcgcaac
ggcaagggcggacgcgacggcgcacgccgcgacgaagcgcgccaggaccgcgagccgcag
gcccgccgcgacaagccgcaggtgcaggtgcaggccaacgcgcagaacggccaggcccag
cagcccaagcagaagcagccgcaaccgcagcagcccaagcaggcgcagcagcccaagccg
cagaacgcgcagcagaatccgccgccgcagcccaagccgcaaggcgaggaacgcaacgcg
caggccaatgccggcaacggccaggcgccgcgcgcgccgcgtaacgagcccaagccgccg
cgtcaggatgcagcggccgaaaccgccgccgctgtcgccgtgcccgcggctgccgctgct
gcagtcgccgcgccgctcgcgacgccgccggtaagcgacgacaccacgctcaagaccgag
gccgccgtcgccgaaaccgcgaccgccaccgtcgaatcgcgcgaaggcgatgccgcacag
gccgatggcacgggcgaaggcggcggtcgccgccgtcgcggccgtcgcggtggccgtcgt
cgtcgtcgcggcaacggtgaagccggcgccgcgggcgaaggccagggtcaggacgagaac
ggcttcgacgacgaagacgacatgggcgccgagcccgccgcggctccggccgccgcgcac
cgctcgcagcccgagttcgacttcgaagacgactccggcgccgctgcgccgcgcgcgcag
aacgcgcctgcggccacgaccgcagcagtggtcgctgccgccgcgagcagcaccttcgtg
ccctcgcgcgaaagcgccgccgacggcaagccctcgttcgcgcatttcggcgaacacgcg
cacggcgacgccgaagcggcgaagccggtgaagaccgaacgcgccgtgtttgcggccgaa
ccggtcgcggtggaatcggctgcagcggaaccggctccggccgtgtccgcccaggtcgaa
tccgcaccggctgcgtccacgcaggccgaaccggttcgccatgaaacggtagccacgccg
gccccggccgccgtcgccacctcgttcacggcgccggccagcagcttcgcccagcccgcg
tcgtcgttcgcagccgacgttccggcggcgacgccggcccaggccgccgtggaagcggtc
gagcatgccaagccggccatcgccgcggtcagcagcggagcctccgcgcagccgcgtgaa
tcggccccggcgcagccggagaaggtcgagccgtcggcgcgcatcgagccgacggtggtc
gaaccggtcgtggtcgagtcgcccaccgtggtcgaaaccgcggtgatcgaaccggtggtg
atcgagccggcggtaacgccgcgcgatgagaaccccggtgaggccgaagcctctgccgct
aacgtcgccacggtctcgccggcggtggaagccgcgatcggcctgccggtccagccggcc
gcaccgatcgtggtcgcgccgatcgaaaccgctccgacggcgttcgcgacgcccgtcgcc
agtgcgcccacggcggagatcgaaccgatcgcctccgaacaggcctcgccgctgacgccg
cgtaccggcggtctgttcgacaccctgccccatccggccgcggtcaacgccgacgccgcc
agcgatacggcgcaggacgaagaaggcaagaccggcgacggcgagcacgacggcggtccg
gacgacgggcagcacgaacgccgcgcctga
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