Lysobacter solisilvae: H8B22_14365
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Entry
H8B22_14365 CDS
T07218
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lsx
Lysobacter solisilvae
Pathway
lsx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H8B22_14365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsx03019
]
H8B22_14365
03009 Ribosome biogenesis [BR:
lsx03009
]
H8B22_14365
Enzymes [BR:
lsx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H8B22_14365
Messenger RNA biogenesis [BR:
lsx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H8B22_14365
Ribosome biogenesis [BR:
lsx03009
]
Prokaryotic type
rRNA processing factors
H8B22_14365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QNP42245
UniProt:
A0A7H0G1S9
LinkDB
All DBs
Position
complement(3058238..3061357)
Genome browser
AA seq
1039 aa
AA seq
DB search
MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGKITRLEPSLEAAFVDYGAE
RHGFLPLKEISRDYFQPGVDHNKAGLKELLKEGQEIVVQVDKEERGNKGAALTTFISLAG
RYMVLMPNSPTAGGVSRRIEGDDRAALKEAMDKLTIPDDMGVIIRTAGVGRDAEELQWDL
DYLLQVWKSVAEAALSKPSPFLIYAESRLIIRALRDYMRPDIGEILVDTPEMYAEAREFV
EQVMPHNQRKLKHYTDDTPLFNRFQIESQIENAYEREVRLPSGGALVIDQTEALTAIDVN
SARATKGGDIEETAFHTNLEAAEEAARQLRLRDLGGLVVIDFIDMASNKHQREVENRLQN
ALKQDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCEGHGRMRSVESLSLSILR
LAEEHAMKENTGQVLVQAPTEIANYLLNEKRRALTEIEKRHDAPIVIVADEQLHTPHYEV
TRIRENELGEESSKPSYHRGTPRKLPTHALTKAHLNIPALPAVTNVKPASPAPLREPREV
RETPVAPVAAPAPVAAPQASVGIVDRILGFFRGSKPITVDAAPSERTPQGRGQDRGDRNQ
RRDGQERRNGKQGRDRREERRDERRGPQQQQQPKQQQSSLQKQQPQQKQEQKLEQQQKPQ
QPKQQQQPQKQNAPRQQNEERAQQQQRPPRDPQQARQESAKPETSAAPSPELTVAAPVAA
SAAAIAADNLAVVQVEATSIVAATAPVTEADAPSAAGAEGEGSGRRRRGRRGGRRRRRGG
AAGEAGALAAGEAQDEGAFDDLMAGDDTDADEGEELVIEIDDEAAPARVQRSQPEFDFDD
IAPAKPLPAPLAAAPLAAAVATAIDALPVKAPVAAAPAPAQKTPADVAAEAVGEVESTPA
VRVAAATVAPTNADQEQAVVVTDEAIEPAIVPAPEAVEAEVVTDVVIDIDERPDTGALTN
ALPGDSGHVAANVSAEVEPAATASVGIDEEPAAAAASQLPIEELPRTAGLFDDVPQPLAP
APADAAAKVASQDSDNQRV
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcgacgcaggcggaagaactgcgcgttgccatcgtcgacggccagacc
ctgtacgacatcgacatcgaacagccgtcgaaggaacagaagaagtcgaacatctacaag
ggcaagatcacccgtcttgaaccctccctcgaagcggccttcgtcgactacggcgccgag
cgccacggcttcctgccgctgaaggaaatttcccgcgactacttccagcccggcgtcgac
cacaacaaggccggcctgaaggagctgctgaaggaaggccaggaaatcgtcgtccaggtc
gacaaggaagaacgcggcaacaagggcgcggccctgaccacgttcatctcgctggccggc
cgctacatggtgctgatgccgaactcgcccaccgccggcggcgtctcgcgccgcatcgag
ggcgacgaccgcgccgccctcaaggaggcgatggacaagctgaccatccccgacgacatg
ggcgtgatcatccgcaccgccggcgtcggccgcgatgccgaagaactgcagtgggacctc
gactacctgctgcaggtctggaagtcggtggccgaagcggcgctgagcaagccgtcgccg
ttcctgatctacgccgaatcgcgcctgatcatccgcgccctgcgcgactacatgcgcccg
gacatcggcgagatcctcgtcgacaccccggagatgtatgccgaggcgcgcgagttcgtc
gaacaggtgatgccgcacaaccagcgcaagctgaagcactacaccgacgacacgccgctg
ttcaaccgcttccagatcgaatcgcagatcgagaacgcctacgagcgtgaagtccgcctg
ccctccggcggcgcgctggtcatcgaccagaccgaagcgctgaccgcgatcgacgtcaac
tcggcgcgcgccaccaagggcggcgacatcgaggaaaccgcgttccacaccaacctggaa
gcggccgaagaagccgcccgccagctgcgcctgcgcgacctcggcggcctggtggtgatc
gacttcatcgacatggcgtcgaacaaacaccagcgcgaggtcgaaaaccgcctgcagaac
gccctcaagcaggaccgcgcccgcgtccagctcggccgcatctcgcgcttcggcctgatg
gagatgtcgcgccagcgcctgaggccctcattgggcgaatccagccagatcgtctgcccg
cgctgcgaaggccatggccgcatgcgcagcgtcgaatcgctgtcgctgtcgatcctgcgc
ctggccgaagagcacgcgatgaaggagaacaccggccaggtgctggtgcaggcgccgacc
gagatcgccaattacctgctcaacgagaagcgccgcgcgctcaccgagatcgagaagcgc
cacgacgcgccgatcgtgatcgtcgccgacgagcagctgcacacgccgcactacgaagtc
acccgcatccgcgagaacgaactcggcgaagagtcgagcaagcccagctaccaccgcggc
acgccgcgcaagctgccgacgcacgcgctgaccaaggcccacctcaacatcccggcattg
ccggcggtgaccaacgtcaagccggcctcgccggcgccgctgcgcgagccgcgtgaagtg
cgcgagacgccggtcgccccggtagccgcgcctgcgcccgtggcggccccgcaggcgtcg
gtcggcatcgtcgaccgcatcctcggtttcttccgcggcagcaagccgatcacggttgac
gccgcgccttctgaacgcacgccgcaaggccgtggccaggatcgtggcgaccgcaaccag
cgtcgtgacggacaggagcgccgcaacggcaagcagggccgcgaccgccgcgaggagcgt
cgtgacgagcgccgtggcccgcagcaacagcagcagcccaagcagcagcaatcgtcgctg
cagaagcagcagccccagcagaagcaggagcagaagctggagcagcagcagaagccgcaa
cagccgaagcagcagcaacagccgcagaagcagaatgcgccgcgccagcagaacgaggag
cgtgcgcaacagcagcagcgaccgccgcgcgatccgcagcaggccaggcaggagtcggcc
aagccggaaacgagcgcagcgccgtcgcctgaactgaccgtcgccgcaccggttgccgca
agcgccgccgccattgccgccgacaaccttgcggtcgtgcaggtcgaagcgacttcgatc
gtggctgccactgcacccgtaaccgaagcggacgcaccgtccgccgccggtgccgaaggc
gaaggcagcggccgtcgtcgtcgtggccgtcgtggtggtcgtcgtcgtcgtcgtggcggt
gccgcgggcgaagccggcgcactggccgcgggcgaagcccaggacgaaggcgcgttcgac
gacctgatggccggcgacgatacggatgccgacgagggcgaagagctcgtcatcgaaatc
gatgatgaagccgcgcctgcccgggtccagcgttcgcagccggagttcgacttcgacgac
atcgcgcccgccaagccgctgccggcaccgctcgccgccgcgccgctggcggccgccgtt
gccacggcgatcgacgcgttgccggtgaaggcgccggttgccgcggcccctgcccccgcg
cagaagaccccggccgacgtcgccgctgaagccgttggcgaagtcgaatcgacacccgcc
gtccgcgttgccgccgcaacggttgcgccgacgaatgccgatcaggagcaggctgtcgtg
gtcacggacgaagcgatcgaacccgctatcgtgccggcaccggaagcagtggaagcggaa
gtcgtcaccgacgtcgtcatcgacatcgacgaacgccccgacaccggcgcgctgaccaat
gcgctgccgggcgacagcggccatgtcgctgcgaacgtcagcgccgaagtcgaaccggcg
gcgaccgcatcggtgggcatcgatgaggagccggcggccgccgcggcctcgcagctgccg
atcgaggaactgccgcgcaccgccggcctgttcgacgacgtgccgcaaccgctcgcgccc
gccccggccgatgccgcggccaaggtcgccagccaggacagcgacaaccagcgcgtgtaa
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