Pseudoduganella albidiflava: EYF70_04315
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Entry
EYF70_04315 CDS
T05903
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mali
Pseudoduganella albidiflava
Pathway
mali03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mali00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EYF70_04315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mali03019
]
EYF70_04315
03009 Ribosome biogenesis [BR:
mali03009
]
EYF70_04315
Enzymes [BR:
mali01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EYF70_04315
Messenger RNA biogenesis [BR:
mali03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EYF70_04315
Ribosome biogenesis [BR:
mali03009
]
Prokaryotic type
rRNA processing factors
EYF70_04315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QBI00157
UniProt:
A0A411WUI3
LinkDB
All DBs
Position
complement(1017218..1020637)
Genome browser
AA seq
1139 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSY
GEDRHGFLPFKEVARSYFREGIDVRNATIKDALREGQEIVVQVEKEERGNKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPQGMSVIARTAGIGRNVDELQ
WDLNYLMQLWRAIEGASKSASGAFLIYQESSLVIRAIRDYYQPDIGEILIDTDEIYEQAH
QFMSHVMPDMVHRVKRYSDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIETTAFHTNCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQ
VLRIIQEEAMKENSAAIHVQVPVDVAAFLLNEKRGEVLKIENRHRITVILVPNKHLDTPH
YKLERIKHDDPRLEESAASYTMAEQAETDMGFAKRQKEEQKPRQEAVVKTITPSQPAPIV
DRTPAPVPVQPVAPPPVAVPAPAEKGFFAKLVSFFTGKTEEPAPPAAPAIVTKPAAVPAE
RADKNGRGQRARGPRGPKDREPGARDEAGKPATEARPARPPRPPREPREKLDKFADKGVD
KVEAEGVVAAAVTPRAERGERPDRAERPQREPREPREARPPREPRELREARETKAQPAEA
KADELALAATGVGPVGTGTGASVGVPAIAPAAAPSADAPSLVKSTGNAGPEGEELDGEGG
DEPRRRRRRGGRNRNRREREGAEGEGIESADEFAGAAAEGDTIKAATESVVTEQVQVATR
EAALAPAETPAAVAQVEPVAAAVAAIEAVEHTPAAVEPVQQVAPAAEAPVSAEVTETKPA
DTTPVAIEPAEAEIVQAPVAEPLPVAAVQAPAAPVAIEPAEAEVVQAPAAEPLPVAAQAA
AVPAEAAEPAAAPVAAEPAEAEVVDAPAAEPLPPATTAPAAVDVTPVVEAAVVIPAAAEI
GTAEAVAAEDVATQPVPVTTAAELLAAQAPAPAPAPAPAPAPAPAPAPAPAPAAVAAAPA
DLQTILAAAGLQMAATDPAKLRAAQEAAAHEAAPVRVGRTRKPAPVVVEEPLVQVDTRR
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgctacgcagcaggaagagctgcgcgtagccattgtcgat
ggtcagaaactgatcgacatcgacatcgaaaccgccggacgcgagcaacgcaagtccaat
atctacaaaggcgtgatcacccgcatcgagccgtcgctggaagcctgcttcgtcagctat
ggtgaagaccgccacggtttcctcccgttcaaggaagtggcacgcagctatttccgcgaa
ggtatcgacgtgcgcaacgccaccatcaaggatgcgctgcgcgaaggccaggaaatcgtt
gtccaggtggagaaggaagagcgcggcaacaagggcgccgccctgacgtcgttcatctcg
ctggccggccgctacctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcgtcgagggcgaggagcgccaggaactgcgcgaaacgatggacaagctggacttgcca
caaggcatgtccgtgatcgcccgcaccgccggcatcggccgaaacgtcgatgaactgcag
tgggacctgaattacctgatgcagctgtggcgcgcgatcgaaggcgcgtcgaaatcggct
tccggcgccttcctgatctaccaggaatcgtcgctcgtgattcgcgccatccgcgattac
taccagcccgacatcggcgagatcctgatcgatacggacgagatctacgaacaggcccac
cagttcatgagccacgtgatgcccgacatggtgcatcgcgtcaagcgctacagcgacgac
gtgccgctgttctcgcgcttccagatcgaacaccagatcgaaacggcctacagccgcaca
gtaccgctgccatccggcggcgccatcgtgatcgaccacaccgaagccctggtgtccgtg
gacgtcaactcggcccgcgccacgcgcggttccgacatcgagaccacggccttccatacc
aactgcgaagcggccgaggaagtggcccgccagttgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaagtggcgaagaaccagcgtgaagtggaacagcgc
ctgaaggatgcgctgcaccacgaccgtgcgcgcgttcagatgggcaagatttcccgcttt
ggcctgatggaactgtcgcgccagcgcctgcgcccttcgctgtccgaaggctcgcacgtg
acgtgcccgcgctgctccggcaccggtcacatccgcgataccgaatcctccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacagcgccgccatccacgtgcag
gtgccggtcgacgtggccgccttcctgctcaatgaaaagcgcggcgaagtgctgaagatc
gagaaccgccaccgcatcaccgtgatcctggtgccgaacaagcacctcgatacgccgcac
tacaagctcgagcgcatcaagcacgacgatccgcgcctggaagaatcggccgccagctac
accatggccgagcaggcggagaccgacatgggcttcgccaagcgccagaaggaagagcag
aagccgcgccaggaagccgtggtgaagaccatcacgccaagccagccggccccgatcgtc
gaccgtacgcctgccccggtaccggtgcagccggtcgctccgccgccggtggcagtaccg
gccccggccgaaaaaggcttctttgccaagctggtttccttcttcaccggcaagaccgag
gaaccggcaccgccggctgccccggccatcgtgacgaagcccgccgccgtgccggccgag
cgtgccgacaagaacggccgcggccagcgtgcccgtggcccgcgtggtccgaaagaccgc
gaaccgggtgcccgcgacgaggccggcaagccggcgacggaagcgcgcccggcccgtccg
ccgcgcccgccacgcgaaccgcgtgaaaagctggacaagtttgccgacaagggtgtcgac
aaggtggaagccgaaggtgtcgtggcagctgccgtgacgccacgcgccgagcgtggcgaa
cgcccggaccgtgccgaacgcccgcagcgcgagccgcgtgaaccgcgcgaagcccgtccg
ccgcgtgaaccgcgcgaattgcgtgaagcgcgcgaaacgaaagcccagccagccgaagcc
aaggccgatgaactggcgctggccgcaacgggcgtgggtccggtcggtaccggcacgggc
gccagtgtcggcgtgccggccatcgcgcctgccgctgcgccgtccgccgacgcgccgagc
ctggtgaaatccaccggcaacgcgggaccggaaggcgaggaactggacggcgaaggcggc
gacgagccgcgccgccgccgccgccgtggcggtcgcaaccgtaaccgccgcgaacgtgaa
ggcgccgaaggcgaaggcatcgagtccgccgacgagtttgccggcgccgccgcggaaggc
gacaccatcaaggctgccaccgaatccgtggtgaccgagcaggtgcaggtcgctacccgc
gaagcagccttggcgccggccgaaacgccggcggcagttgcccaggtcgagccggtggcc
gccgccgtcgccgcgatcgaggcggtcgagcacacgccagccgccgtggaaccggtgcag
caggtggctccggctgccgaggcgcccgtcagcgcggaagtgacggaaacgaagccggcc
gacaccacgccggtggccatcgagccggccgaagcggaaatcgtgcaggcaccggttgcc
gagccgctgcccgtggctgctgtgcaagcgcctgccgcgccggtggccatcgagccggcc
gaagcggaagtcgtgcaggcacccgccgccgaaccgctgcccgtggcagcgcaagccgcc
gcagtaccagcagaagcagcggaacctgcggccgccccggtagcagccgagccggccgaa
gcggaagttgtcgacgccccggcggccgagccgctgccgccagccacgaccgcgcctgcc
gccgtcgacgtgacgccggtggtggaagccgccgtggtgatcccggctgccgccgagatc
ggcactgccgaggcggtcgccgccgaggacgtggcaacgcaaccggtgccggtcaccacg
gcagccgagctgctggccgcgcaagcgcctgctccggctccggctccggcccctgctcct
gctccggctccggctcctgccccggctcccgctcctgccgcggttgcagcggcgccggcg
gacctgcaaacgatcctggcagccgccggcctgcaaatggccgcgacggacccggccaag
ctgcgtgccgcccaggaagcggcggcacacgaagcagcgccggtgcgggtgggccgcacg
cgcaagccggcgccggtggtggtggaagagccgctggtgcaggtggatacccgacgctga
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