Pseudoduganella albidiflava: EYF70_30665
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Entry
EYF70_30665 CDS
T05903
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mali
Pseudoduganella albidiflava
Brite
KEGG Orthology (KO) [BR:
mali00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mali03016
]
EYF70_30665
Enzymes [BR:
mali01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EYF70_30665
Transfer RNA biogenesis [BR:
mali03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EYF70_30665
Prokaryotic type
tRNA splicing ligases
EYF70_30665
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QBI04702
UniProt:
A0A411X704
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All DBs
Position
7365375..7366610
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AA seq
411 aa
AA seq
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MKTGQYDMMDVEGGSPVKMWTQGVPVEQAAREQLANTARMPFIYKHIAVMPDVHLGKGST
IGSVIPTLGAIIPAAVGVDIGCGMMAAKTTLNARDLPDNLAPLRSAIEKAIPHGMSPKTR
GYRGRDVGSWHDAPSTVDAAWMQLKDEFDAICEKTPKLKNTNNHRHLGTLGGGNHFIEVC
LDEEGAVWFMLHSGSRGVGNAIGTHFIELAQREMRTHMANLPDSDLAYLREGTSHYDDYV
EAVGWAQKFARMNREVMMRNLIAAVRTVIAKPFETHVEAVNCHHNYVQKETHFGKEVLVT
RKGAVSARAGELGIIPGSMGARSFIVRGKGNAESFHSCSHGAGRTMSRNEAKRRFTLADQ
ERATEGVECRKDSGVIDEIPMAYKDIDAVMRAQDELVEVVHTLKQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccggacagtacgacatgatggacgttgagggcggcagccctgtgaagatgtgg
acgcagggcgtgccggtcgagcaggcggcgcgcgagcagctcgctaataccgcaaggatg
ccgttcatctacaagcacatcgcggtgatgccggacgtccacctgggcaagggatcgacg
atcgggagcgtgattcccacgctgggtgcgatcatcccggcagccgtcggggtcgacatt
ggttgcgggatgatggccgcgaagaccacgctgaacgcgcgcgacctgccggacaatctg
gcaccgctgcgcagcgcgatcgaaaaggccatcccgcacggcatgtcgccgaagacgcgt
ggctaccgcggacgcgacgtgggatcctggcacgatgcgccatcgacggtcgatgccgcc
tggatgcagctgaaggatgaattcgacgcgatctgcgagaaaacgccgaagctgaagaac
acgaacaatcaccgccacctcggcacgctgggcggcggcaatcacttcatcgaggtatgc
ctggacgaggaaggtgccgtatggttcatgctgcactccggttcgcgtggcgtaggcaat
gccatcggcacgcacttcatcgagctggcgcagcgggagatgcgcacgcacatggcgaac
ctgcccgacagcgacctggcctatctgcgcgagggcacgagccactacgacgattacgtg
gaagcggtgggctgggcgcaaaaattcgcccgcatgaaccgcgaggtcatgatgcgcaac
ctgatcgccgcggtgcgcaccgtgatcgcgaagccgtttgaaacgcacgtggaagcggtc
aactgccaccacaactacgtgcagaaagaaacgcacttcggcaaggaggtactggtcacc
cgcaagggtgcggtgtcggcacgcgcgggcgaactgggtatcatcccgggctcgatgggc
gcgcgcagcttcatcgtgcggggcaaggggaatgcggagagcttccacagctgcagccat
ggcgccggccgcacgatgagccgcaacgaagcgaagcggcgtttcacgctggcggaccag
gagcgcgccaccgagggcgtcgaatgccgcaaggatagcggtgtgatcgatgagatcccg
atggcctacaaggatatcgacgccgtgatgcgggcccaggatgaactggtcgaagtggtg
cacacgctgaagcaagtcgtatgcgtgaagggctaa
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