Marinobacter sp. JH2: MARI_15380
Help
Entry
MARI_15380 CDS
T06162
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
marj
Marinobacter sp. JH2
Pathway
marj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MARI_15380 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marj03019
]
MARI_15380 (rne)
03009 Ribosome biogenesis [BR:
marj03009
]
MARI_15380 (rne)
Enzymes [BR:
marj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MARI_15380 (rne)
Messenger RNA biogenesis [BR:
marj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MARI_15380 (rne)
Ribosome biogenesis [BR:
marj03009
]
Prokaryotic type
rRNA processing factors
MARI_15380 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF5053
Motif
Other DBs
NCBI-ProteinID:
QBM17425
UniProt:
A0A4P6WF96
LinkDB
All DBs
Position
1657632..1660637
Genome browser
AA seq
1001 aa
AA seq
DB search
MKRMLINATHPEELRVALVDGQRLFDLDIESSTREQKKANIYKGRITRVEPSLEAAFIDF
GADRHGFLPLKEISKEYFKKSPSQIEGKINIKDVLSEGQEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGEDRAQLKEAMNGVQVPKSMGIIVRTAGIGRTTEE
LQWDLDYLVQFWEAITQAADERKAPFLIHQESNLIIRAVRDYLRQDIGEVLIDSESVYED
VLSFVRAVMPTFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALV
SIDINSSRATKGHDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVE
QKMREALEIDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLA
LSIMRLIYEESSKEKTAEVRAIVPVSVATFLLNEKRKQLADIESGQGVSIVVVPVPNMET
PHFEIVRMRQDETAPEHISSHQVAHEYNEREEESVVEVTSTEKPAREQAAVKAIRPAPAP
AAKPSVKAEPADADEGSFRKLCKKIASFFNGEADTTADNKQATKSAGNNRRPQARPDRQD
RRKSRVARDDQRDGNRNGNERRQNNRNRPNRNDDQNRGSQGRQTQQDKPADNKGNDNRRD
GRKEGQNRGQGRNRPQRDAKDLKDQRDTRDNQANSKGPASDKPNDDKRRKPRRQRNRDGS
AAEAPASTPAARKAERSDKHQKDTQPEKAVEEKASSAPKAAVETGVKAKDANTQPQTKPA
AEQSPKAEERKPHAVEAKTETVQPVAKEQDSAPKAKEEAKPANTDEAAKAAPESKADESK
PEKRKPAPRQRKPQAEKEAKAEQTSEAPKASEPVADSKDKTDSKPAEAPKTEAKPAPETK
ASEAKTEAPKAEAEKAEKAEKAEKAEKAEKPAEATEKPKATAKADTKPEAKAEAEPKAEP
AKAEASSAIDVPVTPGRAYNDPREVRKRKRAAEQAKKAEDN
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaatgcaactcaccctgaagagttgcgcgtagcactggtagac
ggccaacgactgtttgatctggacattgaatccagcacccgcgaacagaaaaaagccaac
atttacaaaggcagaatcactcgtgtagagcccagcctcgaagcggccttcatcgacttt
ggtgccgaccgtcacggcttcctgcccctgaaagaaatctccaaagaatacttcaagaag
tcgcccagccagatcgaaggcaaaatcaatattaaagatgtgctttctgaaggtcaggaa
gtcatcgtacaggtcgataaagaagagcgcggcaacaagggtgcagccctgactaccttt
atttctttggctggccgctatttggtgctaatgcccaacaaccctcgtgcaggcggtatc
tctcgccgtatcgaaggtgaagatcgcgctcaactcaaagaagcgatgaacggcgttcaa
gtacccaaatctatgggtatcattgtccgtaccgccggaatcggccgcaccacagaagaa
ctccagtgggatctcgattatctggttcagttctgggaagccatcacccaggccgccgac
gagcgaaaagccccttttctgatccatcaggaaagcaatctgatcatccgtgccgtgcgc
gattatcttcgccaagacatcggtgaagtgttaattgactcagaaagcgtttatgaagac
gtactgagctttgttcgcgccgttatgccgacctttgaaaacaagatcaaactgtacaaa
gatgaaatccctttgttcagtcgttaccagatcgaaggtcagatcgagaccgctttccag
cgtgaagtaaaactgccttccggtggctctattgttatcgatccgaccgaagctctggta
tctatcgacatcaactcgtctcgcgccaccaaaggccacgatatcgaggaaacggcgtta
cagaccaaccttgaagccgccgaagaaattgctcgccagctgcgcttacgtgacatgggc
ggcctgattgtcatcgacttcatcgacatgacaccagccaaacatcagcgcgaagtagaa
caaaagatgcgtgaagcgctggaaattgaccgtgcccgcgttcaagttggcaagatttcc
cgcttcggtttgcttgaaatgtcgcgccagcgcctacgcccctcactcggcgaaacccgt
agtgaagtgtgcccgcgctgcgaaggccaaggtactattcgaggcatcgaatctctggcg
ctgagcatcatgcgcctgatctacgaagaatcttctaaggaaaaaaccgcagaagtccgg
gccatcgtgccggtttccgttgcaaccttcctgttgaacgagaagcgcaagcagctagca
gacatcgaatcgggtcaaggcgtgtctatcgtggtcgtcccggttccgaacatggaaacc
ccgcacttcgaaatcgttcgtatgcgtcaggacgaaactgcgcctgagcacatttccagc
catcaggtggcccacgaatacaacgagcgtgaagaagagtccgttgttgaagtaaccagc
accgaaaaacccgctcgagagcaagctgcggttaaagccattcgcccagcaccggcccct
gcagccaaaccatccgtcaaagctgaacccgctgatgctgatgaaggctctttccgcaag
ctgtgtaaaaaaatcgccagcttctttaacggcgaagcagacaccacagctgacaacaag
caggccacaaaaagtgccggcaataaccgtcgcccacaggctcgccccgaccgtcaggat
cgccggaaatcgcgggtagctcgagatgaccagcgagacggcaatcgcaatggcaacgag
cgccgccaaaacaaccgcaatcgccctaaccggaatgacgaccagaaccgtggttcacaa
ggtcgccaaactcagcaagacaagcctgctgacaacaagggcaacgacaaccgcagagac
ggccgaaaagaaggccagaaccgcggtcagggtcgaaatcgcccgcagcgcgacgcgaaa
gatctaaaagatcaaagggacacccgcgacaatcaggccaactcgaagggccctgcgagc
gacaaaccaaacgacgacaagcgccgtaagcctcgtcgtcagcgtaatcgtgatggctca
gcagctgaagcaccggcatcaacacctgccgcccgcaaagctgagcgtagcgacaagcac
caaaaagatacgcagccagaaaaagccgttgaagaaaaagcctcttcagcaccgaaagcc
gcagtagagacaggcgttaaagcgaaagacgctaacactcaaccccagaccaaaccggct
gcagagcaaagcccgaaagcggaagagcgtaagccgcacgccgtggaagcgaaaactgaa
actgtccagcccgtagccaaggagcaggactccgcgcccaaggcaaaagaagaggctaaa
cctgcaaacacggatgaagcagctaaagcggcacctgagagcaaagccgacgaaagcaag
ccggagaagcgcaagcctgcccctcgtcagcgcaaaccacaggccgagaaagaagccaaa
gccgagcaaaccagcgaagcgccgaaggcaagcgagcctgtagccgatagcaaagacaaa
acagacagcaagccggcagaagctcccaaaacagaggcaaaacctgcccctgagacaaaa
gccagcgaagctaaaacggaagcacctaaggccgaagctgagaaggctgagaaggctgag
aaggctgagaaggctgagaaggctgagaagccagccgaagctaccgaaaagccaaaagca
accgctaaggcagatactaagcccgaagcaaaagctgaagccgagccaaaggctgagccc
gctaaagccgaagcttccagcgctatcgatgtgccggtaacgccaggtcgcgcttacaac
gatccaagagaagtccgcaagcgcaagcgtgcggccgaacaagccaaaaaggccgaggat
aattga
DBGET
integrated database retrieval system
