Massilia sp. WG5: AM586_22570
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Entry
AM586_22570 CDS
T04122
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
masw
Massilia sp. WG5
Pathway
masw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
masw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AM586_22570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masw03019
]
AM586_22570
03009 Ribosome biogenesis [BR:
masw03009
]
AM586_22570
Enzymes [BR:
masw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AM586_22570
Messenger RNA biogenesis [BR:
masw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AM586_22570
Ribosome biogenesis [BR:
masw03009
]
Prokaryotic type
rRNA processing factors
AM586_22570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
NuDC
Motif
Other DBs
NCBI-ProteinID:
ALK98567
LinkDB
All DBs
Position
2219138..2222341
Genome browser
AA seq
1067 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSY
GEDRHGFLPFKEVARSYFRDGVDVRNCTIKEALREGQEIMVQVEKEERGNKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPQGMSVIARTAGIGRTVEELQ
WDLNYLMQLWRAIEGAGKSAPGPFLIYQESSLVIRAIRDYFQPDIGEVLIDTDEIYDQAQ
QFMSHVMPDMAHRVKRYSDDVPLFSRFQIEHQIETAYARTVPLPSGGAIVIDHTEALVSI
DVNSARATRGSDIETTAFNTNCEAADEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQ
VLRIIQEEAMKENSAAIHVQVPVDVAAFLLNEKRGEVLKIENRHRITVILIPNKHLETPH
YKLERIKHDDPRLEDAASSYTMAESADTDMAYAKRQKEEAKPRQEAVVKTITPAQPAPVV
ERREPVKAEAAPAAAPVPPVAPPAPPAEEGFFTKLRNFFFGRPVTVTPPAPAAAPVKPAE
PAPAAERGERAGRGQQRNGRGGRNGTAGGKGREREDREQVAKGAPVDESTKPAEAEGKPA
RPPRKPREQREPREGRETRDVREPREQAEAQAQPAPRAERGERPERAERAERPPRQPRER
AERAPVAEAKAEELNVVQATTATSVTIASTGPNGEQEIVQEQIVKTVTAIGPNDEDADHG
DQEGGDEPRRRRRRGGRNRNRRDRDQADVIENESGEEGAPAFAPVADEEAAKFQAEAKAA
KSKGAKPAKGQPKGEAQGPWPFPTAASVKAAADKAAAERAAAEQAATRARAEQAAAAALQ
AAAAQAAAEAAKASSQGPWIFPTAKSVAEAAARSAAAQAPTAPAPAPAPAPAPVAPAAPA
APAPAPVEAAAPAPKPVVMPAPVAPVAPPAPAPVQAAAPAPAPTAAQADLGEVLAQAGLQ
LAATDPEKLRAAQEAAAQAQQPVRLGRTRKLAPPPAQEPLIQVDTRQ
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgtttaacgctacgcagcaagaggagctgcgcgtagcgattgtcgac
ggtcaaaaactgatcgacatcgatatcgagaccgctggtcgagaacagcgcaaatcgaat
atctacaaaggtgtcatcacccgcatcgaaccctccctcgaagcttgcttcgtcagctac
ggcgaagaccgccacggtttcctccccttcaaagaagtcgcccgttcctatttccgcgac
ggcgtcgacgtccgcaattgcaccatcaaggaagcgctgcgcgaaggccaggaaattatg
gtccaggtcgagaaagaggagcgcggcaacaagggcgcggcactgacctccttcatttcg
ctggccggccgctacctggtcctgatgccgaataatccgcgtggcggcggcgtctcgcgc
cgggtcgaaggcgaagaacgccaggaactgcgcgagaccatggacaagctggacttgccg
caaggcatgtcggtcattgcccgcaccgccggcatcggccgcacggtcgaagaactgcag
tgggacctgaattacctgatgcaactctggcgcgcgatcgaaggcgccggcaaatcggcc
ccgggccccttcctgatctaccaggaatcctccctcgtcatccgcgccatccgcgattac
ttccagccggacatcggcgaagtcctgatcgacaccgacgaaatctacgaccaggcccag
cagttcatgagccacgtgatgcccgacatggcgcaccgcgtgaagcgctacagcgacgac
gtccccctgttctcccgtttccagatcgaacaccagatcgagaccgcctacgcgcgcacc
gtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaagccctggtctccatc
gacgtcaactcggcgcgcgcgacccgcggctcggacatcgagaccaccgccttcaacacc
aactgcgaagcggccgacgaagtggcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaagtcgccaagaaccagcgcgaagtcgaacagcgc
ctgaaggacgccctgcaccatgaccgtgcacgtgtccagatgggcaagatctcgcgcttc
ggcctgatggaactgtcgcgccagcgcctgcgtccgtcgctgtcggaaggctcgcacgtc
acctgcccgcgctgctcgggtaccggccacatccgtgataccgaatcctccgccctgcaa
gtcctgcgcatcatccaggaagaggcgatgaaggaaaactcggccgcgatccacgtccag
gtcccggtcgacgttgccgcgttcctgttgaacgagaagcgtggcgaagtgctgaagatc
gagaaccgccaccgcatcacggtcatcctgatcccgaacaagcacctcgagaccccgcac
tacaagctcgagcgcatcaagcacgacgacccgcgcctggaagacgctgcctccagctat
accatggccgagtcggctgacaccgacatggcctacgccaagcgccagaaggaagaagcc
aagccgcgccaggaagccgtggtcaagaccatcaccccggcccagccggccccggtggtg
gagcgccgtgaaccggtcaaggcggaagccgccccggccgccgctccggtgccgccggtc
gcgccccctgccccgccggcagaggaaggcttcttcaccaagctgcgcaatttcttcttt
ggccgtccggtcaccgtgaccccgccggccccggccgcagcgccggtcaagccggctgaa
ccggccccggcagccgaacgcggcgagcgcgccggccgtggccagcagcgcaatggccgt
ggcggacgcaacggtaccgccggcggcaagggtcgcgagcgcgaagaccgcgaacaggtc
gcgaaaggcgccccggtcgacgagagcaccaagccggcggaagccgaaggcaagccggcc
cgtccgccgcgcaagccgcgtgaacagcgcgagccgcgcgaaggccgtgaaacccgcgac
gtccgcgaaccgcgcgagcaggccgaagcacaggcccagccggccccgcgcgccgaacgt
ggcgagcgtccggaacgcgccgagcgtgcggaacgcccgccgcgccagccgcgtgaacgt
gccgagcgcgcaccggtcgccgaagcgaaagccgaggaactgaacgtggtgcaagccacc
accgcgaccagcgtcacgatcgcgtcgaccggcccgaatggcgagcaggaaatcgtccag
gagcaaatcgtcaagaccgtcactgcgatcggtccgaacgacgaggacgccgatcacggc
gatcaagagggaggcgacgagccgcgccgccgtcgccgtcgtggcggccgcaaccgtaac
cgccgcgaccgcgaccaggccgacgtcatcgagaacgaaagcggcgaagaaggcgcaccg
gcatttgccccggtcgccgacgaggaagccgccaagttccaggccgaagccaaggctgcg
aagtcgaagggcgccaagccggccaagggtcagccgaagggtgaggcccagggtccatgg
cccttcccgaccgctgcttcggtgaaagccgcggccgacaaggccgcagctgaacgggct
gccgccgagcaggccgccacccgggcgcgtgccgaacaggccgccgccgccgcgctgcag
gctgccgctgcccaggctgccgccgaggccgccaaggcatcgagccagggtccgtggatc
ttcccgaccgcgaaatcggtcgccgaagctgctgcccgcagcgctgccgcccaggcgccg
actgctccggctccggccccggctccggccccagctccggttgcaccggccgctccggct
gcgccggcaccggctccggtcgaagctgccgctcccgcgccgaagccggtcgtgatgccg
gcgccggtggcgccggtggcgccgcctgctccggcgccggttcaagctgctgctccggca
ccggccccgactgctgcccaggccgatctgggtgaagtgctggcccaggctggcctgcag
ctcgccgcgaccgatccggaaaagctgcgcgccgcccaggaagcggccgcccaggcccag
cagccggtccgtctcggccgcacccgcaagcttgctccgccgccggcacaggaaccgctg
atccaggtggatacgcgccagtaa
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