Mycolicibacterium celeriflavum: MCEL_01820
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Entry
MCEL_01820 CDS
T08164
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mcee
Mycolicibacterium celeriflavum
Pathway
mcee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCEL_01820 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcee03019
]
MCEL_01820 (rne)
03009 Ribosome biogenesis [BR:
mcee03009
]
MCEL_01820 (rne)
Enzymes [BR:
mcee01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MCEL_01820 (rne)
Messenger RNA biogenesis [BR:
mcee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MCEL_01820 (rne)
Ribosome biogenesis [BR:
mcee03009
]
Prokaryotic type
rRNA processing factors
MCEL_01820 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
BBY41887
UniProt:
A0A1X0BYC1
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All DBs
Position
190121..192826
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AA seq
901 aa
AA seq
DB search
MAEDASTEDLSEDTRHAEDTQPEESATETADTAGPPPDGDQSEPRLIPEESAASTQEHAD
YLPLFVAPQPVRFEYDADADADDEEDDDDSDDGQDSDTDDDQSERPSGRRRRRGRRGRGR
GRGEQNGDDADSDSDQGGEQDSDDSDDSDDDSGDDENSGADGATRRRRRRRRRKSGSSDD
NDGGTSPDDPPNTVVHEREPRKSSKADKSGQGGDGEIQGISGSTRLEAKRQRRRDGRDAG
RRRPPILSEAEFLARREAVERMMVVRDKVRTEPPHEGARYTQIAVLEDGVVVEHFVTSAA
QTSLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGQNRKIEQALKP
GDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILRE
VVPPDAGVIIRTASEGVKEEDIRNDVERLAKRWAEIEAKAAEITAKKAGAAVALYEEPDV
LVKVIRDLFNEDFTGLTVSGDEAWNTINEYVNSVAPELLPRLTKYEPVVSSEGQTGPDVF
AVHRIDEQLTKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNLE
AAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLV
QLTRKRLGTGLVEAFSTSCTHCGGRGIVLHGDPVDSTSSSGRKSEGGGGRRGKRGKRSGK
SDDVAVAKVPPHPAGEHPMFKAMAAANGRHDEDDEDETDEQKPAEEVGEADSEAIRAAVT
ETDDEDLEDEDFDDSDEDSDEDSEDDEDDDSEDDDSEDDEIDLDSDDDEDDIDDDIEVID
EDSDDSEDESDDDSDEDDDDSDDDSQEYDANGASPAAVTGSGGRHRRRAAARPAGPPAHE
G
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaagatgcctcaaccgaagacctttcagaagacacgcgacacgcggaggacacc
cagccggaggagtcggcgaccgaaaccgccgatacggccgggcctcctcccgacggtgac
cagtccgaaccccgactgatcccggaagagtccgcggcgagcacccaggagcacgccgac
tacctcccgctgttcgtggcgccgcaacccgtccggtttgaatatgacgccgacgccgac
gctgacgatgaagaggacgacgacgacagcgacgacggccaggacagcgacaccgacgat
gaccagtccgaacggccatccgggcggcgtcgccgccggggtcggcgcggacggggccgc
ggccggggtgagcagaacggcgacgacgccgactccgacagtgaccagggcggcgagcag
gacagcgacgactcggacgactccgatgacgactccggtgacgacgagaactccggcgcc
gacggtgccacccggcgccgccgccgtcgtcgtcgccgcaaatcgggctcgagcgacgac
aacgacggaggcacgtcgcccgacgacccgcccaacaccgtcgtccacgagcgggagccg
cggaagtcctcgaaagccgacaagtcaggccaaggtggcgacggcgagatccagggcatc
agtggatcgacccggctggaggccaaacggcaacgcaggcgcgacggccgcgatgccggc
aggcgccgcccgccgatcctgagcgaagccgagttcctggccaggcgcgaggccgtcgag
cggatgatggtcgtgcgcgacaaggtccgcaccgaaccacctcacgaaggcgcccgctac
acccagatcgccgtgctcgaggacggcgtcgtggtggagcacttcgttacctcagcggcg
cagacgtcactggtgggcaacatctacctgggcatcgtgcagaacgtgctgccgtcgatg
gaggcggcattcgtcgacatcggccgcggccgcaacggtgtgctgtacgccggcgaggtg
aactgggaggccgcgggcctcggcgggcagaaccgcaagatcgagcaggccctcaagccg
ggcgactacgtcgtcgtgcaggtcagcaaggacccggtcggccacaagggcgcccggttg
acgacgcaggtttcgctcgccggccgctacctcgtctacgtgccgggagcctcgtcgacc
ggcatcagccgcaagctgcccgacaccgagcgtcagcggctcaaagagattctgcgggag
gtcgtgccgcccgacgccggggtgatcatccgcaccgcgtcggagggcgtgaaggaagaa
gacatccgcaacgacgtcgaacgcctcgccaagcggtgggcggagatcgaggccaaggcc
gcggagatcaccgcgaagaaggccggcgcggcggtcgcgctgtatgaagagcccgatgtg
ctggtcaaggtgatccgcgacctgttcaacgaggacttcaccggcctgacggtgtccggc
gacgaggcctggaacaccatcaacgagtatgtgaactccgttgcccccgaactgcttccg
cgcctgacgaagtacgagccggtggtgtcttccgaaggccagacgggccctgacgtgttc
gccgtgcaccgcatcgacgagcagctgaccaaggcgatggaccgcaaggtgtggttgccg
tcgggcggcacactggtcatcgaccgcaccgaggcgatgacggtcgtcgacgtcaacacc
ggcaagttcaccggctccggcggcaacctcgagcagaccgtcactcgcaacaacctcgag
gcggccgaggagatcgtccgccaattacggttgcgcgacatcggcggcatcgtcgtcatc
gacttcatcgacatggtgctcgagtcgaaccgcgacctggtgctgcgcagactgaccgag
gcgctggcgcgggaccgcaccagacaccaggtctccgaggtgacatcgctgggcctggtg
cagttgacgcgcaagcggctcggcaccggtctggtggaggcgttctcgacctcgtgcacc
cactgcggcgggcgggggatcgtgctgcacggcgaccccgtggactccacgtcgagcagc
ggacgcaagtccgagggcggcggcggtcggcgaggtaagcgcggtaagcgcagcgggaag
tcggacgacgtcgcggtcgccaaggtgccgccgcatcccgcgggcgaacacccgatgttc
aaggcgatggcggccgccaacggccgtcacgacgaggacgacgaggacgagaccgacgag
cagaagcccgccgaggaggtcggtgaggccgattcggaggccatccgtgccgcggtcacc
gagaccgacgacgaggacctcgaggacgaggatttcgacgattcggacgaggactccgac
gaggactccgaggacgacgaggacgacgactccgaggacgacgactccgaggacgacgag
atcgaccttgattccgacgacgatgaagacgacatcgacgacgacatcgaggtcatcgac
gaagactctgacgactccgaagacgaatccgacgacgattccgacgaggatgacgacgat
tcggacgacgactcgcaggagtacgacgcaaacggggcttcgccggccgcggtgaccggc
tccggtgggcggcatcggcgccgcgcggccgctcggcctgcgggcccgcccgcccacgaa
ggctga
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