Mycolicibacterium diernhoferi: K0O62_19395
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Entry
K0O62_19395 CDS
T07506
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mdf
Mycolicibacterium diernhoferi
Pathway
mdf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0O62_19395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdf03019
]
K0O62_19395
03009 Ribosome biogenesis [BR:
mdf03009
]
K0O62_19395
Enzymes [BR:
mdf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K0O62_19395
Messenger RNA biogenesis [BR:
mdf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K0O62_19395
Ribosome biogenesis [BR:
mdf03009
]
Prokaryotic type
rRNA processing factors
K0O62_19395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
QYL21185
LinkDB
All DBs
Position
complement(4100283..4103357)
Genome browser
AA seq
1024 aa
AA seq
DB search
MAEDAPTQDQVENTQRSEELPAKLRVHSLARVLGTTSKRIVDALAELDGRSRSPHSTVAR
EQAEQVREVLNAEAAASAVEVPAVDSVTEAAPQEAAPEVPAPGDAPEAVAPEAPEAPAED
APEAVAIVIEEPESRLLLEAPPAPEAPAESPATHEPAPYLPLFVAPQPVEFAPRPTPVDD
HDDDAEDTDADDTADGDDDQSERPAARRRRRGRRGRGRGRGEPSAEDGSEDAEDTDADVT
DEAGAEESEDADSDSDEDTDADEDAGEDGAGAEAGSRRRRRRRRRKSGSADSDEASSPDD
PPNTVVHERAPRAKSSSARDGKDSDEIQGISGSTRLEAKRQRRRDGRDAGRRRPPILSEA
EFLARREAVERTMIVRDKIRTEPPHEGARYTQIAVLEDGVVVEHFVTSAASASLVGNIYL
GIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGAQRKIEQALKPGDYVVVQVSK
DPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILREVVPAGAGVII
RTASEGVKEDDIRADVNRLQERWTQIEAHAAEVTAKKSGAAMALYEEPDVLVKVIRDLFN
EDFSNLIVSGDDAWKTINEYVTSVAPELVPRLTKYEPANPDGPDVFAVHRIDEQLAKAMD
RKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTKNNLEAAEETVRQLRLRDI
GGIIVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKKLGTGLIEA
FSTTCTHCAGRGIHLHADPVDTATPSGGNNNRKADAGGGGSRRSKRGKKAAKTEDVPDTV
QLAKVPAHAAGEHPMFKAMAAGLHGNGDGEDGEDIGDDVAETSLAETEVTESAVDEDFEE
PDTLEDSDEDTDDDSDDDDSDEDELVDIDDDDDEADDDDIEVLDDEDDEDSDEDDSDLDD
EDDDADEDDSDLDDEDEDDDDDSEDDSEDDSHEVIAVTPPPPVVAPRGRVRRRAAARPAG
PPTA
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaagatgcccctacccaagaccaagtcgaaaacacccagcgcagcgaggaactg
ccggcgaagctgagagtccactcgctggcccgcgtgctgggcaccacgagtaagcgcatc
gtggacgctctcgccgagctggacggacggtcccgcagcccgcattcgacggtggcgcgc
gagcaggccgagcaggtccgcgaggtgctcaatgccgaggccgccgcgtccgcggtcgag
gttccggccgtggacagcgtcaccgaagcggccccgcaggaagccgccccggaggtcccg
gcgcccggcgacgcgccggaggctgtcgctcccgaagcacccgaagcccccgccgaggat
gcccccgaggcggtcgcgatcgtcatcgaggagccggaatcccggctgctgctggaggcg
cccccggcccccgaggcaccggccgagtctcccgcaacccacgagccggcgccgtacctc
ccgctgttcgtggccccgcagcccgtcgagttcgcgccacggccgacgccggtcgacgac
cacgacgatgacgccgaagacaccgacgccgatgacaccgcagacggcgacgacgaccag
tccgagcggcccgccgcacggcgccgtcgccgcggtcgccggggtcggggacgtgggcgc
ggggagccgagcgccgaggacggcagcgaggatgccgaggacaccgacgccgatgtcacc
gacgaggccggcgccgaggaatccgaggacgccgacagcgactccgacgaggacaccgac
gccgatgaggatgccggtgaagacggcgcaggtgccgaggcgggcagccgccgtcgccgc
cgccgtcgccgccgcaagtcgggatcggccgattccgacgaggccagctcacccgacgat
ccgcccaacaccgtcgtgcacgagcgcgcgccgcgggccaagtcgagctccgcgcgggac
ggaaaagactcagacgagatccagggcatctccggatccacccggttggaggccaagcgt
cagcgtcgccgtgacggccgggacgccggtcgccggcgcccgcccatcctgagcgaggcc
gagttcctggcccgtcgcgaggccgtcgaacgcaccatgatcgtgcgcgacaagatccgc
accgaaccgccgcacgagggtgcgcgctacacccagatcgccgtcctcgaagacggcgtc
gtggtcgaacactttgtgacgtcagccgcctcggcatctctggtcggcaacatctacctg
ggcatcgtgcagaacgtgctgccctcgatggaagccgcgttcgtcgacatcggccgcggc
cgcaacggcgtgctgtacgcgggcgaggtgaactgggaggccgccggtctcggtggcgcc
cagcgcaagatcgagcaggccctcaagcccggcgactacgtcgtcgtccaggtcagcaag
gacccggtcggccacaagggcgcccggctcaccacgcaggtgtcgctggccggccgctac
ctggtctacgtgccgggtgcctcgtcgaccggcatcagccgcaagcttcccgacaccgag
cggcagcggctcaaggagatcctgcgcgaggtcgtcccggccggcgccggcgtgatcatc
cggaccgcgtcggagggcgtcaaggaagacgacatccgcgccgatgtgaaccggctgcag
gaacgctggacgcagatcgaggcacacgccgccgaggtcaccgcgaagaagtccggcgcg
gccatggcgctgtacgaagagcccgacgtgctcgtcaaggtcatccgtgatctgttcaac
gaggacttctccaacctcatcgtctccggtgacgatgcctggaagaccatcaacgagtac
gtgacgtccgttgcgccggagctggttccgcggctgaccaagtacgagcccgccaacccg
gacgggccggatgtgttcgcggtgcaccgcatcgacgagcagctggccaaggcgatggac
cgcaaggtgtggctgccctcgggtggcaccctggtcatcgaccgaaccgaggcgatgacc
gtcgtcgacgtcaacaccggcaagttcaccggttcgggcggcaacctcgaacagacggtg
accaagaacaacctggaagccgccgaggagaccgtgcgccagctccggctgcgcgatatc
ggcggcatcatcgtcatcgacttcatcgacatggtgctggagtccaaccgcgacctggtg
ttgcgccggctgaccgaggcgctggcccgggaccggacccgccatcaggtctcggaggtg
acttcgctcgggttggtgcagctgacccgcaagaaactcggcaccggactgatcgaggcg
ttctccaccacttgcacgcattgcgcgggccgggggatccacctgcacgcggacccggtg
gacaccgccacgccgtccgggggcaacaacaaccggaaggccgacgcgggcggtggcgga
agccgtcgcagcaagcgcggcaagaaggccgccaagaccgaggacgtgccggacaccgtg
cagctggcgaaggtgcctgcgcacgccgccggtgagcatccgatgttcaaggcgatggcg
gccgggctgcacggcaacggcgacggtgaggacggcgaggacatcggggacgacgtcgcc
gagacctctctggcagagaccgaggtgaccgagtcggccgtggatgaggacttcgaggag
cccgacaccctggaggattccgacgaggacaccgacgacgattccgacgacgacgattcg
gacgaggacgaactcgtcgacatcgatgatgacgacgatgaagccgatgacgatgacatc
gaggtcctcgacgacgaggacgatgaggactcggacgaggacgactcggacttggacgac
gaggacgatgacgccgacgaggacgactcggacctggacgacgaggacgaggacgatgac
gacgactctgaggacgactccgaggacgactcccacgaggtgatcgccgttaccccgcca
ccgccggtggtggcccccagaggccgggttcgcaggcgggctgcggcccgtccggcgggc
ccgccgaccgcctag
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