Mycolicibacterium doricum: MDOR_26140
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Entry
MDOR_26140 CDS
T06662
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mdr
Mycolicibacterium doricum
Pathway
mdr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MDOR_26140 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdr03019
]
MDOR_26140 (rne)
03009 Ribosome biogenesis [BR:
mdr03009
]
MDOR_26140 (rne)
Enzymes [BR:
mdr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MDOR_26140 (rne)
Messenger RNA biogenesis [BR:
mdr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MDOR_26140 (rne)
Ribosome biogenesis [BR:
mdr03009
]
Prokaryotic type
rRNA processing factors
MDOR_26140 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
PCB_OB
IF2_N
Motif
Other DBs
NCBI-ProteinID:
BBZ08445
UniProt:
A0A7I7VVK4
LinkDB
All DBs
Position
complement(2629393..2632134)
Genome browser
AA seq
913 aa
AA seq
DB search
MHSLARVLGTTSRRVLDALAELDGRARSAHSTVDQTEAEKVREVLAGGDGDAPAPGQEPE
SRLILETATVERADYLPLFVAPQPVRFEPADEDDDEDDDTASADSDDDEEDPSERPAARR
RRRGRRGRGRGRGEQSDDNGDVDAEGGETKTDSGAYSDSDQDTGEDSDEDGDEDASGGDG
SSRRRRRRRRRKSGSPDDSDNGSPDDPPNTVVHERPPRERGGKSGDGDDNEIQGISGSTR
LEAKRQRRRDGRDAGRRRPPILSEAEFLARREAVERVMVVRDKVRTEPPHEGARYTQIAV
LEDGVVVEHFVTSPASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAA
GLGGQNRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRK
LPDTERQRLKEILRAVVPADAGVIIRTASEGVKEDDIRSDVNRLQERWTQIETKAAEITA
KKAGAAVALYEEPDVLVKVIRDLFNEDFSGLIVSGDEAWNTINSYVESVAPDLMPRLTKY
EPAGNSNGGDGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLIIDRTEAMTVVDVNTGKFTG
SGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARD
RTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTPCPHCAGRGIVLHGDPIDNVSGNGGGKS
EPGMGRRSKRGKKGGKPEEVPVAVPVIKVPPHPAGEHPMFKAMAAANGGHDESEDESTDD
TPAREDDTAEKVHDAVAEELDDEEFADSDDEDSDDEDSDDEDPDDEDSDQIDLDNDDDEE
DDDIDDIDVLDDDEEDSDEDSRDPEDNDEDEDDGEDDDEDEDDDEDEAEVIVVAARRPRR
RAAARPAGPPSSE
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
gtgcattccctggcccgggtgctgggcaccaccagcaggcgggtcctcgacgcgctggcc
gaacttgacggccgcgcccgcagcgcgcactcgaccgtcgaccagaccgaggccgagaag
gtccgcgaagttctcgccggcggcgacggggacgcacccgcacccggccaagagccggag
tcgcggctgatcctcgagacggccactgtcgagcgagcggactacctgccgctgttcgtc
gcgccgcaaccggtgcggttcgagcccgccgacgaggacgacgacgaggacgacgacacc
gcgtcggccgacagcgacgacgacgaggaggacccgtcggagcggcccgccgcacgccgc
cgacggcggggacgccgcggccggggacgcggccggggcgagcagagcgacgacaacggc
gacgtagacgccgagggcggcgagaccaagaccgacagtggggcctactccgactccgat
caggacaccggggaggactccgacgaggacggcgatgaggacgcctcgggcggcgacggc
agttcacgccggcgccggcgccggcgccggcgcaagtccgggtctccagacgactccgac
aacggctcaccggacgacccgccgaacaccgtcgtgcacgaacgtcccccgcgtgagcgg
ggcggcaagtccggcgacggcgacgacaacgagattcagggcatcagcggctcgacgcgc
ctggaggccaagcggcagcgccgccgcgacggccgcgacgccggacggcgtcgtccgccg
atcctgtccgaagccgaattcctggcccgccgcgaagccgtcgaacgcgtcatggtggtc
cgcgacaaggtgcggaccgaacctccccacgagggcgcgcgctacacccagatcgccgtg
ctggaggacggcgtcgtcgtcgaacacttcgtgacgtcgccggcgtccgcgtcgctcgtc
ggcaacatctacctgggcatcgtgcagaacgtgctgccgtcgatggaggcggcgttcgtc
gacatcggtcgcggccgcaacggcgtgctctacgccggtgaggtgaactgggaggccgcc
ggcctcggtggacagaaccgcaagatcgagcaggccctcaaacccggcgactacgtcgtg
gtgcaggtcagcaaggacccggtcggccacaagggtgcccgcttgaccacgcaggtgtcg
ctggccgggcggtacctggtctacgtgccgggcgcgtcgtcgaccggcatcagccgcaag
ctgcccgacaccgagcggcaacggctcaaggagatcctgcgcgcagtggtccccgccgac
gccggcgtgatcatccgcactgcgtcggagggcgtcaaggaagacgacatccgctccgac
gtcaaccgtctgcaggagcgatggacgcagatcgagaccaaggccgccgagatcaccgcg
aagaaggccggcgccgccgtcgcgctctacgaagagcccgacgtgctggtgaaggtgatc
cgcgacctgttcaacgaggacttctccggactcatcgtctcgggtgacgaggcctggaac
accatcaactcctacgtcgagtccgtggcacctgacctgatgccacgactgaccaagtac
gaaccggccggcaactccaacggcggcgacggccccgacgtgttcgccgtgcaccgcatc
gacgagcaactcgccaaggccatggaccgcaaggtgtggctgccgtccggcggaaccctc
atcatcgaccgcaccgaggcgatgaccgtggtcgacgtcaacaccggcaagttcaccggg
tccggcggcaacctcgagcagaccgtcacccgcaacaacctcgaggcggccgaggagatc
gtgcggcagttgcggctgcgcgacatcggcggcatcgtcgtcatcgacttcatcgacatg
gtgctcgagtcgaaccgcgatctcgtgttgcgccggctgaccgaggcgctggcccgcgac
cgcacccgccaccaggtgtccgaagtgacgtcgctgggtctggttcagctgacgcgtaag
cggctcggcaccgggctcatcgaggcgttctccacgccgtgtccgcactgcgcgggtcgc
ggaatcgtgctgcacggcgacccgatcgacaacgtgtccggcaacgggggcggcaagtcc
gaacccggaatggggaggcgcagcaagcgcggcaagaagggcggcaagcccgaggaggtg
ccggtcgccgtgccggtgatcaaggtgccgccgcaccccgccggtgaacacccgatgttc
aaggcgatggccgccgccaacggcggtcacgacgagtccgaagacgagtccaccgatgac
accccggcccgcgaggacgacaccgcggagaaggttcatgacgccgtcgccgaagaactc
gacgacgaggagttcgcggactccgacgacgaagactccgacgacgaggactccgacgac
gaggaccccgacgacgaggactccgaccagatcgacctcgacaacgacgacgacgaagag
gacgacgacatcgacgacatcgacgtcctcgacgacgacgaagaagactccgacgaggac
tcccgggatcccgaggataacgacgaggacgaggacgatggcgaggacgatgacgaggac
gaggacgatgacgaggacgaagccgaggtgatcgtggtcgcggcccggcgcccgcggcga
cgcgccgcggcacgtccggcgggtccacccagcagcgagtag
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