Martelella endophytica: TM49_13015
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Entry
TM49_13015 CDS
T03801
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mey
Martelella endophytica
Pathway
mey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TM49_13015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mey03019
]
TM49_13015
03009 Ribosome biogenesis [BR:
mey03009
]
TM49_13015
Enzymes [BR:
mey01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TM49_13015
Messenger RNA biogenesis [BR:
mey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TM49_13015
Ribosome biogenesis [BR:
mey03009
]
Prokaryotic type
rRNA processing factors
TM49_13015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AJY46386
UniProt:
A0A0D5LQJ7
LinkDB
All DBs
Position
complement(2860707..2863625)
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AA seq
972 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQLRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPLADREALLREAAADADDGDDEPTTSEPAEAAAEAANQP
KPRTRRGKARSRGKTADADKSETAGEENTAEAAEAPAEATAEATEAEKPKPRRRRRTTKA
KAAEGEAENAETASDASDDDDDSSPTSMAAKVDSDTISEDIDDDDTVESVGAEDAMEEVP
EHEHRRVRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGG
GISRKITNPADRKRLKEVAKGLEVPQGMGVILRTAGANRTKAEVKRDFEYLMRLWENVRT
KTLTSTAPCLVYEEGSLIKRSIRDLYNKDINEVIVSGDEGYREAKDFMKMLMPSHAKVVQ
RYRDVHPIYSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIED
TALQTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRAVEKKLKDCLKNDRARIQVG
RISHFGLLEMSRQRIRASVLESTTQVCSHCGGTGHVLSQSSVALHVLRGVEEYLLKNTTH
NITVRTTPDIALYLLNQKRNTIVDYENRFGLEIIISSDADLENTHFEIDRGEPVAEPVKI
ETLFNFAEEPEDDVADIIEETPDEDEAEEATSNNDNGNNGGEEQSRSRRKRRRRRGGRSG
NGQQSADAENGSQADASDDDDGDDDAQQNAIADAATDDERPSKRKRRRGKRGGRRNRSEG
DDEQTNGSEASNDEAGETDNAEDTVAANEAEAPAQEPAEAAPAVAGTTEAVSEEAKPAAE
EEPKAEVVVGEDEAMAEIEGRKPRRRRRKPKEEAEAPEEAPVESPEEPVTAETAAETEAV
ETAATELDDAAAVAEEPAVEAAPAEQTDTPKRANRASNVSHSEPVVTSNGAQETDEEPSK
PKRGWWNRRGFF
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgcttatcgacgcctctcacgaagaggagacgcgcgtcgtcgtcgta
cgcggaaatcgtatagaggagttcgatttcgaatcgcagcataagaaacagctgcgcggc
aatatctatctggcgaaggtgacccgggtcgagccctccctgcaggcggccttcgtcgat
tatggcggcaatcgccacggcttcctcgccttctccgaaatccatccggattactaccag
atcccgctcgccgatcgcgaggcgttgctgcgtgaagcggctgccgacgccgatgatggc
gacgacgaaccaacgacgagcgagccggccgaagccgcggccgaggccgccaatcagccg
aagccacgcacccgtcgcggcaaggcacgctcgcgcggcaagacggccgacgcggacaag
agcgaaaccgccggcgaagagaacaccgccgaggctgccgaagcccccgctgaggccact
gccgaagcgaccgaggccgaaaagccgaagccgcgccgtcgccgccggaccaccaaggcc
aaggctgccgagggcgaggccgagaatgccgagaccgcgagcgacgcatccgacgacgat
gacgacagctcgccgaccagcatggccgcgaaagtcgattccgacacgatctccgaagac
atcgacgatgacgacacggttgaatccgtcggcgccgaagatgcgatggaagaagttccg
gagcacgagcaccgccgcgtgcgcaagcagtaccgcatccaggaagtcatcaagcgccgg
cagatcctgctggtgcaggtggccaaggaagaacgcggcaacaagggcgcggccctgacg
acctatctctcgcttgccggccgctattcggtgctgatgccgaacacggcgcgtggcggc
ggcatttcgcgcaagatcaccaatccggctgaccgcaagcggctgaaggaagtggccaag
ggccttgaagtgccgcagggcatgggcgtgatcctgcgtacagccggcgccaaccgcacc
aaggccgaggtcaagcgcgacttcgaatatctgatgcgcctttgggaaaacgtccgcacc
aagacgctgacgtcgacagcgccctgtctggtctacgaggaaggcagcctgatcaagcgc
tccatccgcgacctctataacaaggatatcaatgaagtcatcgtttccggcgacgagggt
taccgcgaggcgaaggacttcatgaagatgctgatgccgagccacgccaaggtggttcag
cgctatcgcgacgtccacccgatctactcgcgctccggcatcgaagcccagctcgatcgc
atgctgcagccgcaggtgacgctgaaatctggcggctatctgatcatcaaccagaccgaa
gcactggtggcgatcgacgtgaactccgggcgttcgacccgtgaacactcgatcgaggac
accgcgctgcagacaaacctggaggcggccgaggaagtcgcgcgccagcttcgcctgcgc
gaccttgccggcctcgtcgtcatcgacttcatcgacatggaagaaaagcgcaacaaccgc
gccgtcgagaagaagctgaaggattgcctgaagaacgaccgcgcccgcatccaggtcggc
cgcatctcgcatttcggcctgctggaaatgtcgcgccagcgcatccgcgcctcggttctg
gaatcgaccacgcaggtctgcagccattgcggcggcaccggccacgtcctgtcgcagtct
tcggttgccctgcacgtcctgcgtggcgtcgaggaatacctgctgaagaacaccacgcac
aacatcaccgtgcgcacgacgcccgacattgcgctctacctgctgaaccagaagcgcaac
acgatcgtcgactatgaaaaccgcttcggcctcgaaatcatcatttcgtcggatgccgat
ttggagaacacccatttcgagatcgaccgtggcgagcccgtcgccgagccggtgaagatc
gaaacgctgttcaacttcgccgaagaaccggaagacgatgtcgctgacatcatcgaggaa
acgccggacgaggatgaagccgaggaagcgacgtcgaacaacgataatggcaacaatggt
ggcgaagagcagagccgctcgcgccgcaagcgccgccgccgtcgtggcggacggagcggc
aacggccagcagtctgccgacgccgaaaacggttcgcaggccgatgcatccgatgatgat
gacggcgatgacgatgcccagcagaacgccattgcggatgctgccaccgacgacgagcgc
ccgtccaagcgcaagcgtcgccgtggcaagcgtggcggccgccgcaatcgcagcgaaggc
gacgacgagcagacgaacggctcggaggccagcaatgacgaagccggcgagaccgacaat
gctgaagacacggtagcagcgaacgaagccgaggctcccgcgcaggagccggcagaagct
gctcccgccgtggcaggcacgactgaggccgtttccgaggaagccaagccggctgccgaa
gaagagcccaaggccgaagtggtcgttggcgaagatgaggccatggctgaaatcgaaggc
cgcaagccgcgccgccgtcgccgcaagcccaaggaagaggcagaagcccccgaggaagca
cctgtcgaaagccccgaggagccggtgacagcggagaccgccgcggaaacagaggccgtc
gaaaccgcagccacggaactcgatgacgccgcagccgttgccgaagagccggccgttgag
gcagcccctgccgagcagaccgatacgccgaagcgcgccaaccgcgcctcgaacgtttcg
cactccgagccggtcgtgacctcgaatggcgcgcaggaaaccgatgaagagccctccaag
ccgaagcgcggctggtggaaccgtcgcggcttcttctga
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