Microbulbifer sp. THAF38: FIU95_12925
Help
Entry
FIU95_12925 CDS
T06274
Symbol
rtcB2
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mict
Microbulbifer sp. THAF38
Brite
KEGG Orthology (KO) [BR:
mict00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mict03016
]
FIU95_12925 (rtcB2)
Enzymes [BR:
mict01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FIU95_12925 (rtcB2)
Transfer RNA biogenesis [BR:
mict03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FIU95_12925 (rtcB2)
Prokaryotic type
tRNA splicing ligases
FIU95_12925 (rtcB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QFT55457
UniProt:
A0A5P9EY21
LinkDB
All DBs
Position
complement(2927622..2928830)
Genome browser
AA seq
402 aa
AA seq
DB search
MPVKIVLNKNAPQGSVPVKIYTDEIEPQALQQLKNIAQLPIIHSHVAAMPDVHLGKGATV
GSVIPTVSAVIPSAVGVDIGCGMNAVRTSLHAHQLPDNLKALREAIEVKVPIGQGRHKMI
SARESACKLLAPGVDRLFEKHPGLLKKLHQPQKTWVTQMGTLGGGNHFIEICLDENNAVW
VMLHSGSRGIGNAIGQHFIQLARKDMTGHMHNLPDKDLAYFSEGNLHFEDYIQAVNWAQE
YARTNRQEMMKLVLNCLKNHLPKFTLTSEAINCHHNYVMRERHFERDVFVTRKGAISAKK
DQLGIIPGSMGAKSYIVRGRGNAESFHSCAHGAGRKMSRTAARQRFTRQDLEEQTRGVQC
RKDKGVIDEIPAAYKDIDRVMDNQSDLVEVEHTLRQVICIKG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtaaaaattgtgctaaataaaaatgcaccgcaaggtagtgtgccggtaaaaata
tatactgacgaaatcgagccacaggccttacagcagctaaaaaatatcgctcagttaccc
atcattcactcgcacgtggcagcaatgcctgatgtgcatttgggtaagggagcaaccgtt
ggctcggtcattccaacagtgagcgcggtaatcccatcggcggtaggagtggatataggc
tgcggaatgaatgcagtgcgaacttcgttacatgcccatcagttgccagacaacctgaaa
gcattgcgggaggccattgaggtgaaagtacccattggacagggtcgtcacaagatgatc
agtgccagggaatctgcctgcaaacttttagctcccggtgtggataggttgtttgaaaag
catcctgggcttttgaaaaagctgcatcagccccaaaaaacctgggttacccagatgggg
actctgggtggcggcaatcattttattgaaatttgtttggatgaaaacaatgcagtttgg
gtgatgctgcattcaggcagccgaggaattggcaatgccattgggcagcactttattcag
ttggctcgaaaggatatgacggggcatatgcataatctgccagataaagacttggcttac
ttttccgaaggtaacctccattttgaggattacatccaggcggtaaattgggcccaggag
tacgctcgaaccaatcggcaggagatgatgaagctggttttgaattgcctgaaaaatcac
ttgccaaaatttaccctgaccagtgaggcaattaactgtcatcacaattatgtgatgcgc
gagcgccattttgaacgggatgtatttgtaacccgtaaaggggcgatcagtgcgaaaaaa
gatcagttgggaattattccgggctcaatgggtgctaagtcctatattgtgcgtgggcgt
gggaatgctgaatcgttccactcatgcgcccatggtgctggccgtaaaatgagtcgtacc
gcggcacgccagagatttacccggcaggatcttgaagagcagactaggggcgttcaatgc
cgtaaagacaagggagtgatcgatgagattccagcggcttataaagatatagaccgagtt
atggataatcagtcagatcttgttgaagtggagcatacactgcgtcaggtgatatgtatt
aagggttag
DBGET
integrated database retrieval system
