Mycobacterium paraintracellulare: OCQ_15510
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Entry
OCQ_15510 CDS
T01755
Name
(GenBank) rne
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mir
Mycobacterium paraintracellulare
Pathway
mir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCQ_15510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mir03019
]
OCQ_15510
03009 Ribosome biogenesis [BR:
mir03009
]
OCQ_15510
Enzymes [BR:
mir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OCQ_15510
Messenger RNA biogenesis [BR:
mir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OCQ_15510
Ribosome biogenesis [BR:
mir03009
]
Prokaryotic type
rRNA processing factors
OCQ_15510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AFC53063
UniProt:
A0A7I7TRX2
LinkDB
All DBs
Position
1616752..1619532
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AA seq
926 aa
AA seq
DB search
MARTLGTTSKRVLDALSELDGRIRSAHSTVDRADAVRVRDLLAAQAQESPDAATEPVVDA
GEPESRLMLETPDNAAERPHYMPLFVAPQPLDSDDDTDTDTDTDTDEGADSDDSDGDDDE
QVDRPSNRRRRRGRRGRGRGRGEQGGPEGQNDGDDDDEPQGRGKKGAQSDSGDSDDADDE
DSDDGDDSEGGDDGSADGGSRRRRRRRRRKSGSGDDNDEGPSPDDPPNTVVHERPPRNGK
NGGDGGSASNEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLTEAEFLARREAVERVMVV
RDRVRSEPPHQGSRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFV
DIGRGRNGVLYAGEVNWEAAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVS
LAGRYLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRND
VTRLQERWKQIEAKAIEIKEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDEAWN
TINEYVNSVAPDLVSKLSKYEPPAGPDGSSGPDVFAVHRIDEQLAKAMDRKVWLPSGGTL
VIDRTEAMTVVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDM
VLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGR
GILLHTDPVDSAPSNGRKSESGGRRGRRKKNKAEEPVVAKVPVHSPGEHPMFKAMAAGSS
TQTASEDDESDEATEETSDEFDEKKARRDEDVSDTDQEDFDDTDDDSDDDSDDDSDDDTD
DDSDDDSDDDSDDDSDDDDLDDEEDLGDDDEDLELDDDDDLDTEDSDDSDDDDGGSATAD
QGGPTQGRPRRRRAAGRPAGPPIHAD
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
ttggcccggacgctgggaaccaccagcaaacgggtcctggacgcgctcagcgagctggac
gggcggattcgcagcgcacactccaccgtggaccgcgccgacgcggtgcgggtgcgtgac
ctgctggccgcccaggcccaggaatccccggacgccgccaccgaacccgtcgtggatgcc
ggcgaacccgaatcccggctgatgctggaaacccccgacaacgccgccgagcggccgcat
tacatgccgctcttcgtcgcgccgcagccactggacagcgacgatgacaccgacaccgac
accgacaccgacaccgacgagggtgccgactccgacgattccgacggcgacgacgacgag
caggtcgaccgcccgtcgaaccggcggcgccgtcgcggccgccggggccgcggccgcggg
cgcggcgagcagggcggacccgagggccagaacgacggcgacgacgacgacgagccgcag
ggccggggcaagaagggcgcccagtccgactccggcgattccgacgacgccgacgacgag
gactccgacgacggcgacgactccgagggcggtgacgacggttcggcggatggtggcagc
cgtcgccgccgccggcgccggcgccgcaaatccggatcgggcgacgacaacgacgaaggg
ccttcacccgacgacccgcccaacacggtcgtgcacgagcggccgccccgcaatggcaag
aacggcggcgacggcggcagcgcgagcaacgagatcaagggcatcgacggctcgactcgg
ctggaggccaagcgccaacgacgccgcgacggccgcgacgccgggcggcgccgccccccc
gtgctgaccgaggccgaattcctggcccgccgcgaggccgtcgaacgcgtcatggtcgtc
cgggaccgggtccgcagcgagccgccacaccagggttcgcggtatacccagatcgccgtc
ctcgaggacggcatcgtcgttgagcacttcgtgacctcggccgcgtcggcgtccctggtc
ggcaacatctacctcggcatcgtgcagaacgtgctgccctcgatggaggcggccttcgtc
gacatcggccgcggccgcaacggcgtgctctacgccggcgaggtcaactgggaggccgcc
ggactcggcgggtccgaccgcaagatcgaacaggcgctcaagcccggcgactatgtcgtc
gtccaggtcagcaaggacccggtcgggcacaagggggcgcggctcaccacgcaggtgtcg
ctcgcgggccgctacctggtctacgtgccgggggcgtcgtcgaccgggatcagccgaaag
ttgcccgacaccgaacgccagcgcctcaaggagatcctgcgcgaggtggtgccgtccgac
gcgggggtgatcatccggaccgcgtccgagggcgtcaaggaagacgacatccgcaacgac
gtcacccgcctgcaggagcgctggaagcaaatcgaggccaaggccatcgagatcaaggag
aaggccgccggggccgccgtggcgctctacgaagagcccgacgtgctggtcaaggtcatc
cgcgacctgttcaacgaagacttcgcgggcttggtcgtctccggggacgaggcctggaac
accatcaacgaatacgtgaattccgttgcgcccgaccttgtttcgaagctgagcaaatac
gagccgcccgccgggccggacgggtcgagcgggccggacgtgttcgccgtgcaccgcatc
gacgagcagctggccaaggcgatggaccgcaaggtctggctgccctcgggcggcaccctg
gtgatcgaccggaccgaggcgatgacggtggtcgacgtcaacaccggcaagttcactggc
tccggggggaacctcgagcagacggtcaccaagaacaacctcgaggcggccgaggagatc
gtgcgccaactgcggctgcgcgacatcggcggcatcgtcgtcatcgacttcatcgacatg
gtgctggaatccaaccgcgatctggtgctgcgccggctcaccgaggcgctggcccgtgac
cgcacccgccatcaggtgtccgaggtgacgtcgctcggtttggtgcagctgacccgcaag
cggttgggcaccggactggtcgaggccttctcgacgtcgtgcccgaactgtggcggccgc
ggcatcctgctgcacaccgacccggtggattcggccccgtcgaacggccgcaagtccgag
tccgggggccggcgcggccggcgcaagaagaacaaggccgaggagccggtcgtggccaag
gtgcccgtccattcgcccggcgagcacccgatgttcaaagcgatggcggccggctcgtcc
acgcagacggcatccgaggacgacgaatccgacgaggccaccgaggaaaccagcgacgag
ttcgacgagaagaaggcgcggcgcgacgaggacgtctccgacaccgaccaagaggacttc
gacgacaccgacgacgactcggacgacgattccgacgacgactcggacgacgacaccgac
gacgactcggacgacgattccgacgacgactcggacgacgactcggatgacgacgacctc
gatgacgaggaagacctgggcgacgacgacgaggacctcgaactcgacgacgacgacgac
ctggacaccgaggactccgacgattccgacgatgacgacggcggttcggccacggcggac
cagggcggcccaacccagggccgcccccggcgccgacgcgcggcgggcaggcccgccggg
ccgccgatccacgcggactga
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