Mycobacterium intracellulare MOTT-02: OCO_17910
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Entry
OCO_17910 CDS
T01754
Name
(GenBank) rne
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mit
Mycobacterium intracellulare MOTT-02
Pathway
mit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCO_17910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mit03019
]
OCO_17910
03009 Ribosome biogenesis [BR:
mit03009
]
OCO_17910
Enzymes [BR:
mit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OCO_17910
Messenger RNA biogenesis [BR:
mit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OCO_17910
Ribosome biogenesis [BR:
mit03009
]
Prokaryotic type
rRNA processing factors
OCO_17910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AFC48154
LinkDB
All DBs
Position
1831104..1833866
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AA seq
920 aa
AA seq
DB search
MARTLGTTSKRVLDALSELDGRIRSAHSTVDRADAVRVRDLLAAQAQESPDAATEPVVDA
GEPESRLMLETPDNAAERPHYMPLFVAPQPLDSDDDTDTDTDTDTDEGADSDDSDGDDDE
QVDRPSNRRRRRGRRGRGRGRGEQGGPEGQNDGDDDDEPQGRGKKGAQSDSGDSDDADDE
DSDDGDDSEGGDDGSADGGSRRRRRRRRRKSGSGDDNDEGPSPDDPPNTVVHERPPRNGK
NGGDGGSASNEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLTEAEFLARREAVERVMVV
RDRVRSEPPHQGSRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFV
DIGRGRNGVLYAGEVNWEAAGLGGSDRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVS
LAGRYLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRND
VTRLQERWKQIEAKAIEIKEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDEAWN
TINEYVNSVAPDLVSKLSKYEPPAGPDGSSGPDVFAVHRIDEQLAKAMDRKVWLPSGGTL
VIDRTEAMTVVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDM
VLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPNCGGR
GILLHTDPVDSAPSNGRKSESGGRRGRRKKNKAEEPVVAKVPVHSPGEHPMFKAMAAGSS
TQAASEDDESDEATEETSDEFDEKARRDEDVSDADQEDFDDTDDDSDDDTDDDSDDDSDD
DSDDDSDDDDLDDEEDLGDDDEDLELDDDDDLDTEDSDDSDDSDDADGGSATADQGGPTQ
GRPRRRRAAGRPAGPPIHAD
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
ttggcccggacgctgggaaccaccagcaaacgggtcctggacgcgctcagcgagctggac
gggcggattcgcagcgcacactccaccgtggaccgcgccgacgcggtgcgggtgcgtgac
ctgctggccgcccaggcccaggaatccccggacgccgccaccgaacccgtcgtggatgcc
ggcgaacccgaatcccggctgatgctggaaacccccgacaacgccgccgagcggccgcat
tacatgccgctcttcgtcgcgccgcagccactggacagcgacgatgacaccgacaccgac
accgacaccgacaccgacgagggtgccgactccgacgattccgacggcgacgacgacgag
caggtcgaccgcccgtcgaaccggcggcgccgtcgcggccgccggggccgcggccgcggg
cgcggcgagcagggcggacccgagggccagaacgacggcgacgacgacgacgagccgcag
ggccggggcaagaagggcgcccagtccgactccggcgattccgacgacgccgacgacgag
gactccgacgacggcgacgactccgagggcggtgacgacggttcggcggatggtggcagc
cgtcgccgccgccggcgccggcgccgcaaatccggatcgggcgacgacaacgacgaaggg
ccttcacccgacgacccgcccaacacggtcgtgcacgagcggccgccccgcaatggcaag
aacggcggcgacggcggcagcgcgagcaacgagatcaagggcatcgacggctcgactcgg
ctggaggccaagcgccaacgacgccgcgacggccgcgacgccgggcggcgccgccccccc
gtgctgaccgaggccgaattcctggcccgccgcgaggccgtcgaacgcgtcatggtcgtc
cgggaccgggtccgcagcgagccgccacaccagggttcgcggtatacccagatcgccgtc
ctcgaggacggcatcgtcgttgagcacttcgtgacctcggccgcgtcggcgtccctggtc
ggcaacatctacctcggcatcgtgcagaacgtgctgccctcgatggaggcggccttcgtc
gacatcggccgcggccgcaacggcgtgctctacgccggcgaggtcaactgggaggccgcc
ggactcggcgggtccgaccgcaagatcgaacaggcgctcaagcccggcgactatgtcgtc
gtccaggtcagcaaggacccggtcgggcacaagggggcgcggctcaccacgcaggtgtcg
ctcgcgggccgctacctggtctacgtgccgggggcgtcgtcgaccgggatcagccgaaag
ttgcccgacaccgaacgccagcgcctcaaggagatcctgcgcgaggtggtgccgtccgac
gcgggggtgatcatccggaccgcgtccgagggcgtcaaggaagacgacatccgcaacgac
gtcacccgcctgcaggagcgctggaagcaaatcgaggccaaggccatcgagatcaaggag
aaggccgccggggccgccgtggcgctctacgaagagcccgacgtgctggtcaaggtcatc
cgcgacctgttcaacgaagacttcgcgggcttggtcgtctccggggacgaggcctggaac
accatcaacgaatacgtgaattccgttgcgcccgaccttgtttcgaagctgagcaaatac
gagccgcccgccgggccggacgggtcgagcgggccggacgtgttcgccgtgcaccgcatc
gacgagcagctggccaaggcgatggaccgcaaggtctggctgccctcgggcggcaccctg
gtgatcgaccggaccgaggcgatgacggtggtcgacgtcaacaccggcaagttcactggc
tccggggggaacctcgagcagacggtcaccaagaacaacctcgaggcggccgaggagatc
gtgcgccaactgcggctgcgcgacatcggcggcatcgtcgtcatcgacttcatcgacatg
gtgctggaatccaaccgcgatctggtgctgcgccggctcaccgaggcgctggcccgtgac
cgcacccgccatcaggtgtccgaggtgacgtcgctcggtttggtgcagctgacccgcaag
cggttgggcaccggactggtcgaggccttctcgacgtcgtgcccgaactgtggcggccgc
ggcatcctgctgcacaccgacccggtggattcggccccgtcgaacggccgcaagtccgag
tccgggggccggcgcggccggcgcaagaagaacaaggccgaggagccggtcgtggccaag
gtgcccgtccattcgcccggcgagcacccgatgttcaaagcgatggcggccggctcgtcc
acgcaggcggcatccgaggacgacgaatccgacgaggccaccgaggaaaccagcgacgag
ttcgacgagaaggcgcggcgcgacgaggacgtctccgacgccgaccaagaggacttcgac
gacaccgacgacgactcggacgacgacaccgacgacgactcggacgacgattccgacgac
gactcggacgacgactcggatgacgacgacctcgatgacgaggaagacctgggcgacgac
gacgaggacctcgaactcgacgacgacgacgacctggacaccgaggactccgacgattcc
gacgactccgacgatgccgacggcggttcggccacggcggaccagggcggcccaacccag
ggccgcccccggcgccgacgcgcggcgggcaggcccgccgggccgccgatccacgcggac
tga
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