Microvirga sp. 17 mud 1-3: C4E04_09065
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Entry
C4E04_09065 CDS
T05470
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
miv
Microvirga sp. 17 mud 1-3
Pathway
miv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
miv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4E04_09065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
miv03019
]
C4E04_09065
03009 Ribosome biogenesis [BR:
miv03009
]
C4E04_09065
Enzymes [BR:
miv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C4E04_09065
Messenger RNA biogenesis [BR:
miv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C4E04_09065
Ribosome biogenesis [BR:
miv03009
]
Prokaryotic type
rRNA processing factors
C4E04_09065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AWM86858
UniProt:
A0A2Z3I4M6
LinkDB
All DBs
Position
complement(1906689..1909403)
Genome browser
AA seq
904 aa
AA seq
DB search
MANKMLIDASHPEETRVVVVRGQKVEEFDFESANRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRMALLEAEAEAQREEELEEERRSRRRRSSAKRARP
DEAVSSSEVEAGESAAPETGGEEAEGQAGEASAVSEAAEAPRSDGEPEGEAGLEVAQETA
DEGAEVVQASSGEADAAAEAEGGEDDSHDDHDHEDDHDHDDHEHDDTVEQLGGGDAMEDV
PQRPRTPRKQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTGRGG
GISRKITNAADRKRLKEIAQDLAVPEGMGIILRTAGASRTKPEIKRDYEYLMRLWESVRE
LTLSSSAPALVYEEGSLIKRAIRDLYNKDIDDILVSGDDGYREAKDFMRMLMPSHAKIVK
PYREPQPLFAKYGVEAQLDAMFSNHVTLKSGGYLVINPTEALVSIDVNSGRSTREHNIED
TALRTNLEAAEEIARQLRLRDLAGLVVIDFIDMEEKRNNRAVEKKLNECLKNDRARIQVG
RISPFGLLEMSRQRIRTGVLESSSVPCQHCAGTGFVRSTPSVALHVLRSIEETLIKNAGY
NLTVRTRMEAAFYILNQKRIHLRELENRFGVAITIVADETMMGTTTYAIDRGEPALRLEH
KSAATGIQIDAIMPADELEEEAEVEVEVSTDEDEGTEEAHADEERGGEEGEGNGRRRRRR
RRRRGRDRDGVRAEHHGEDEAHEGAASAEDAEEGEEIEGAEAEGSAAQEISGSEDGADER
HGRRRRRGRRGGRGRGRDETVEFAMEEGFVAPQDGESGEAGEARPTEPTMAEAASAEPEE
AAPQSGVSNGIAAPATPAEEAHEPEPQPVVPEPEPVAVVLTPPDPDRPKRAGWWSKAKSV
LSGH
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaagatgctcatcgatgcctcccacccggaagaaacccgggtcgtggtggtg
cgtggtcaaaaggtcgaagaattcgacttcgaatccgctaaccggaagcagctgcgaggc
aatatctatctggcgaaggtcacgagggtcgaaccctccctccaggccgccttcgtcgaa
tatggcggaaaccgccacggtttcctggccttcagcgaaatccaccccgattattaccag
atcccggtcgcggatcgcatggcccttctcgaggccgaggcggaagcgcagcgggaggaa
gagctcgaggaagagcgtcgcagccggcgccgccgctcctccgccaagcgcgcccggccc
gacgaggccgtgtcgtcctcagaggtcgaggcgggggaatccgccgctcctgagaccggc
ggcgaagaggcagagggacaggcgggtgaagcgtctgccgtgtccgaagccgccgaagct
ccgcggagcgatggggagccggagggtgaggctggactggaagtcgcgcaggagaccgcc
gacgagggtgccgaagtcgtccaggcctcgtccggcgaggctgacgccgctgccgaggca
gagggcggcgaggacgacagccacgacgaccatgaccatgaagacgaccatgatcatgac
gaccatgagcacgacgatacagtcgagcagctcggtggcggcgatgccatggaggacgtt
ccccagcgcccccgcaccccgcgcaagcagtacaagatccaggaagtcatcaagcgccgc
cagatcctcctggtccaggtcgtgaaggaagagcgcggcaacaagggcgcagctctcacc
acctatctctcgcttgccggccgctattcggttctcatgccgaataccggacgcggcggc
ggcatttcccgcaagatcaccaatgcggccgaccgcaagcgcctgaaggagatcgcccag
gatctggcagtgccggaaggaatgggcatcatcctgcgcacggccggcgcttcccgcacg
aagcccgagatcaagcgtgactacgaatatctgatgcgtctctgggagagcgtgcgcgaa
ctgacgctcagctcctcggctcctgccctcgtctatgaggaaggctcgcttatcaagcgc
gccatccgggacctctataacaaggatatcgacgacatcctggtctcaggcgacgacggc
tatcgcgaggcgaaggacttcatgcgcatgctcatgccgagccatgccaagatcgtcaaa
ccctaccgcgagccgcagccgctcttcgccaaatacggcgtggaggcccagctcgacgcc
atgttctccaaccacgtcaccctgaaatcgggcggctatctcgtcatcaacccgacggaa
gccctcgtctccatcgacgtgaattccggccgttccacccgcgagcacaacatcgaggat
acggcgcttcgcactaacctcgaggccgccgaggagatcgcccggcagcttcgcctgcgc
gacctcgccggcctggtggtgatcgacttcatcgacatggaggagaagcgcaacaaccgc
gccgtcgagaagaagctcaacgagtgcctgaagaacgaccgcgcccgcattcaggtgggc
cgcatctcgcccttcgggctgctggagatgtcgcgccagcgcatccgcacgggcgtgctg
gaatcgtcctccgtcccctgtcagcattgcgccggcaccggcttcgtgcggtccacgccc
tccgtggctctgcacgtgctgcgctccatcgaagagacgctcatcaagaatgcgggctac
aacctcaccgtccgcacccggatggaggctgcgttctatatcctgaaccagaagcgcatt
cacctgcgtgagctggaaaatcgcttcggcgtcgcaatcaccatcgtggccgacgagacc
atgatgggcacgaccacctatgccattgaccggggcgagcctgccctgcgcctggagcat
aaatccgccgccaccggcatccagatcgatgcgatcatgccggccgacgagctggaggag
gaagccgaggtcgaggtcgaggtttcgaccgacgaggacgaggggacggaagaggcccat
gccgacgaggagcggggcggcgaggaaggcgaaggcaatggccgccgtcgtcggcgccgt
cggcgtcggcgcggccgtgaccgggacggcgtccgggccgagcatcatggcgaggacgag
gcccacgaaggcgcggcctctgccgaagacgctgaagaaggcgaggagattgaaggcgcc
gaagccgaaggcagcgccgcccaggagatctccgggtccgaagacggcgcagacgagcgc
catggccgccgccggcgcagaggccggcgtggcgggcgcggacgtggtcgggacgaaacg
gtcgagttcgccatggaggaaggcttcgtagcgccccaggatggcgagagcggcgaagcc
ggcgaggcacgcccgaccgagcccaccatggccgaggccgcctcggctgagccggaagag
gccgcgccgcagagcggcgtatcgaacgggattgcggctccggccactccggccgaagag
gcacatgagcccgaaccgcagcctgttgttcccgaacccgagcctgtcgccgtggttctc
acgccccccgatccggaccgcccgaagcgcgcgggctggtggtccaaggcgaaatcggtc
ctgagcggccactaa
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