Mus musculus (house mouse): 28088
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Entry
28088 CDS
T01002
Symbol
Rtcb, D10Wsu52e, FAAP, HSPC117
Name
(RefSeq) RNA 2',3'-cyclic phosphate and 5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mmu
Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mmu03016
]
28088 (Rtcb)
Enzymes [BR:
mmu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
28088 (Rtcb)
Transfer RNA biogenesis [BR:
mmu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
28088 (Rtcb)
Prokaryotic type
tRNA splicing ligases
28088 (Rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
28088
NCBI-ProteinID:
NP_663397
MGI:
106379
Ensembl:
ENSMUSG00000001783
UniProt:
Q99LF4
LinkDB
All DBs
Position
10:complement(85774501..85793657)
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AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtaactacaacgatgagctacagttcttggacaagatcaataaaaactgctgg
aggatcaagaagggctttgtgcccaacatgcaggttgaaggagtgttttatgtgaatgat
gctctggaaaaactaatgtttgaggaattaaggaacgcctgtcgaggtggtggtgttggt
ggctttctgccagccatgaagcagattggcaatgtggcagccctgcctggaatagttcat
cggtctatcgggcttcctgatgtccattcaggctatgggtttgccatagggaacatggct
gcctttgatatgaatgaccctgaggccgttgtatccccaggtggtgtcggatttgatatt
aactgtggtgtccgcttgctaagaaccaatttagatgagagcgatgtacagcctgtgaag
gaacaacttgcccaagctatgtttgaccacatccctgttggggtgggatcaaaaggtgtc
attccaatgaatgccaaagacttggaggaggcattggagatgggggtggactggtccctg
agggaaggctatgcctgggctgaagacaaggagcactgtgaggagtatggaaggatgctg
caagccgaccccaataaggtctcacccagggcaaagaaaaggggccttcctcagttgggg
accctgggagcaggcaaccattatgcagaaatccaggttgtagatgagattttcaatgag
tatgccgccaagaagatgggcatcgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtagctacagatgcactggtagctatggaaaaggcc
atgaagagagacaagattatagtcaatgaccggcagttggcttgtgctcggattgcatcc
ccagagggacaagactatctaaagggaatggctgcagctggaaactacgcctgggttaac
cgctcctctatgaccttcttaacccgtcaggcttttgccaaagtcttcaacacaacccct
gatgacctggacctgcatgtgatctatgatgtgtcgcacaatatcgccaaagtggagcag
cacgtggtggatgggaaggaacggacgctgctggtgcacaggaagggatccacccgtgct
ttcccgcctcaccaccccctcattgctgtggattatcaactcacaggacaaccagtgctt
attggtggcaccatggggacctgtagttacgttctgactggcactgaacaaggcatgact
gagacctttggaacaacctgtcatggagcgggccgtgctttgtccagagcaaaatcacgt
cgtaacttagatttccaagatgtcttagacaaactggcagacatgggaattgcaatccgg
gttgcttcccccaagctggttatggaagaggcaccagagtcctataagaatgtgacagac
gtcgtgaacacctgccatgatgctgggatcagcaagaaggccattaaactgagaccaatt
gctgttattaaagggtag
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